PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00008494-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 477aa    MW: 52443.2 Da    PI: 6.5066
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00008494-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.40.000143634011255
                       HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       R +++ +++  L++l+ +      +K + a++L +A+ YIk Lq
  PSME_00008494-RA 363 RKEKLGDRITALQQLVSPF-----GKTDTASVLLEAIGYIKFLQ 401
                       677888999*******998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.674351400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-10361414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.79E-6361404No hitNo description
SMARTSM003530.0097362406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.0E-8365406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042631Biological Processcellular response to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071472Biological Processcellular response to salt stress
GO:2000214Biological Processregulation of proline metabolic process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MESTNLDHDQ NVVDHSGSLL DSSVQMGSFG GVPDTHVWSQ DFLLDNGNND QNMQNLQNNF  60
APHLTEVMCT SRPLSQDELL NRPSDQSHLK KIEEISSGWE LRNQLRPNFH GEESISLSNN  120
ITAGKQQIPS LPNYSLQLMD DRLHNNCAIS DIGSWSLSPN SFTNTGLDMP LFPHYQMVNV  180
KEEFIPMANY SNSGVSNRIL QGFAVSEPYK SSESVFSSFH ESHGNKSMAK AHHLGPMITD  240
HHDYNIGGHG FFPQIPSKHS TGVVTFGSSS CMSMPVLDFL ASKPSDIRLH GAHSSSALNY  300
SQDGKSKLHS GPQNRNTGLG HEGPGTSSEP KRRSSTNHES TMDASFKRPR MESNSTLPAF  360
KVRKEKLGDR ITALQQLVSP FGKTDTASVL LEAIGYIKFL QEQVLSLSLP YMKPGCTSTT  420
QGDQKGWGSS EQQESNESKQ DLRSRGLCLV PVSCTLHVAS DTIGADFWSP SLGGTYR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.19e-38bHLH family protein