PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00008670-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NAC
Protein Properties Length: 90aa    MW: 10710.1 Da    PI: 8.1929
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00008670-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM31.45.3e-1021655494
               NAM 54 eekewyfFskrdkkyatgkrknratk....sgyWkatgkdkevls 94
                      ++ +wyfFs+rdkky++g+r+nrat+    ++yW+ + +  ev+ 
  PSME_00008670-RA 21 RDLKWYFFSPRDKKYPNGTRTNRATEgwllESYWEGQENYLEVIY 65
                      5669********************99899899**98877666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100511.188190IPR003441NAC domain
SuperFamilySSF1019411.57E-81955IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MLQHLTQFLC LFADKSFLPN RDLKWYFFSP RDKKYPNGTR TNRATEGWLL ESYWEGQENY  60
LEVIYDWNKE DPSLLRGACT IGKKNRLGDA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008779619.18e-14NAC domain containing protein 50-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.15e-15NAC domain containing protein 28