PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00008685-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WOX
Protein Properties Length: 325aa    MW: 35694 Da    PI: 8.4661
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00008685-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.81.9e-182181257
                      T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      ++R++++++q+++Le+ F++   +ps++e++++ +++    +++e+ V++WFqNr+ k k+
  PSME_00008685-RA 21 KPRWNPKQDQIRILESIFNSgMVNPSRDEIKRIRARIeefgQVSEASVFYWFQNRKSKTKR 81
                      89*****************99**************************************97 PP
2Wus_type_Homeobox96.91.6e-312081263
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerq 63
                       a++RW+P+++Qi+iLe++++sG+++P+++ei+ri+a++ee+G+++++ VfyWFQNrk++ ++
   PSME_00008685-RA 20 AKPRWNPKQDQIRILESIFNSGMVNPSRDEIKRIRARIEEFGQVSEASVFYWFQNRKSKTKR 81
                       689*******************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.03E-121687IPR009057Homeodomain-like
PROSITE profilePS5007111.4021782IPR001356Homeobox domain
SMARTSM003898.8E-81986IPR001356Homeobox domain
PfamPF000464.0E-162181IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-82181IPR009057Homeodomain-like
CDDcd000862.58E-92183No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MGYASSPNYR QERETSPPKA KPRWNPKQDQ IRILESIFNS GMVNPSRDEI KRIRARIEEF  60
GQVSEASVFY WFQNRKSKTK RVKQRQLQTA QKPKSAPQNG PQTGTLYSSS STSSLQSKPI  120
TDLASNPVNS MHSNIENQPP SSASAVLVSS FASSPVNSMH NNIENKHPSS SVVPMTSFGS  180
VPVNSMHNNI GNQPAPNSSS AVPRSSFVGH HDDVQAMIEE MRIYNELMNL QAFEAVVAAG  240
DRGIMNDAAG TGGVQHQSIN NAANPLITVF INDMPIEIPM GPITFRDFFE DNSMLFHSSG  300
QPVMVNERGL ISEGLVHGAT YFLVC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17380NRKSKTKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.19e-29homeobox-3