PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00008715-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 255aa    MW: 28623.6 Da    PI: 9.8034
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00008715-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260964.1e-308106199
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +Ca Ck  r kC+++C++ pyfpaeq +k   vhk+FG++n  ++l+++p+++reda++slvyeAe r +d v+G +g+i+ +++++++ + e
  PSME_00008715-RA   8 SCAFCKGFRTKCSENCIFVPYFPAEQDRKAFLVHKVFGVHNAARMLREVPPNHREDAAKSLVYEAEQRFKDAVHGTAGIISLMKRRVNEIRRE 100
                       6*************************99999************************************************************** PP

            DUF260  94 lallke 99 
                       +++l++
  PSME_00008715-RA 101 IEKLRT 106
                       998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.5637108IPR004883Lateral organ boundaries, LOB
PfamPF031952.2E-308105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MVSSSKSSCA FCKGFRTKCS ENCIFVPYFP AEQDRKAFLV HKVFGVHNAA RMLREVPPNH  60
REDAAKSLVY EAEQRFKDAV HGTAGIISLM KRRVNEIRRE IEKLRTVLKQ YQKNEIAVQG  120
INRDASNPGG LLQAQQTNSV VQHMEMGMAG TGMGMATASP IHRYRSMEVS REQPVMERTT  180
QYLTREPELQ RAELARSRGD SYYAGLSTSP HPLHYMQVSR KQPVLEPGPQ FQDLAGGGGD  240
PYQAQSSGLF SKHLH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-31711610119LOB family transfactor Ramosa2.1
5ly0_B5e-31711610119LOB family transfactor Ramosa2.1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.19e-33ASYMMETRIC LEAVES 2-like 1