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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | PSME_00008716-RA | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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| Family | LBD | ||||||||
| Protein Properties | Length: 231aa MW: 25153.3 Da PI: 6.9698 | ||||||||
| Description | LBD family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | DUF260 | 29.7 | 1.8e-09 | 1 | 56 | 45 | 100 |
DUF260 45 llkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
+l+++p+ +re++ +slv+eA++r rd vyG+vg++ ++q+++e+++ +l +++e
PSME_00008716-RA 1 MLSEVPQYHRENLKNSLVFEAQCRDRDLVYGSVGIVVSMQSHVEEHERDLFNARAE 56
68999******************************************999877765 PP
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| Protein Features ? help Back to Top | ||||||
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| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03195 | 1.4E-8 | 1 | 52 | IPR004883 | Lateral organ boundaries, LOB |
| PROSITE profile | PS50891 | 9.315 | 1 | 57 | IPR004883 | Lateral organ boundaries, LOB |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 231 aa Download sequence Send to blast |
MLSEVPQYHR ENLKNSLVFE AQCRDRDLVY GSVGIVVSMQ SHVEEHERDL FNARAELFKE 60 MAFQGMYRDS TPHASNPGGL LQQAQQTNTE MGMAGMGSVG MGMGMTSASP LIPEHSMQIS 120 KEEIFVFKPT TRLTREQLLL VELAGGGGGS YDSGLRDSEI TQPSPHHHDS TPTISLGAKN 180 PQDERAGAVA VAADGFEQRS SRKLYRGRGR GRGRGRAAKP VDYLAIPAPA P |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 205 | 215 | RGRGRGRGRGR |
| 2 | 207 | 216 | RGRGRGRGRA |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
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| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G66870.1 | 2e-09 | ASYMMETRIC LEAVES 2-like 1 | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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