PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00008862-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 192aa    MW: 22112.4 Da    PI: 9.7167
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00008862-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP227.21e-082978255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       y+G+r+++ + +Wv eI++p++      + lg+f   eeA ka++a  k ++g
  PSME_00008862-RA 29 LYRGIRQHP-QVKWVTEIQHPRK---GIMVCLGTFNIVEEAVKAYDAEEKIIRG 78
                      69*******.9*********943...38888****************9888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.18E-182888No hitNo description
SMARTSM003802.8E-122992IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-132987IPR016177DNA-binding domain
PROSITE profilePS5103214.462986IPR001471AP2/ERF domain
PRINTSPR003671.3E-63041IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-183087IPR001471AP2/ERF domain
PRINTSPR003671.3E-66888IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MGTENGVISP LKDFEKYAAK CAGRKRMTLY RGIRQHPQVK WVTEIQHPRK GIMVCLGTFN  60
IVEEAVKAYD AEEKIIRGKK SKINFPDDSC FVKMDSSKKV SGKKVKSCAQ NTDLLFEDFN  120
INNKVKYTYS PMPEGYYINR QPESPLSDVC KSDLPIYGYD DMEYGDSKFI KPRASFRSNS  180
YVSKVQYLKQ IR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017615756.15e-27PREDICTED: ethylene-responsive transcription factor RAP2-12-like
STRINGGorai.010G236100.12e-25(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.14e-22ethylene-responsive element binding protein