PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00008883-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HD-ZIP
Protein Properties Length: 294aa    MW: 32562.5 Da    PI: 8.2159
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00008883-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.56.5e-20174228256
                       T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       +k+ ++++eq  +Lee F +nr p+ +er+ LA++l+L   qV vWFqN+Ra++k
  PSME_00008883-RA 174 KKKPRLSEEQYAILEESFSNNRLPTMNERQALARELNLGVHQVEVWFQNKRARMK 228
                       566679***********************************************99 PP
2HD-ZIP_I/II902.8e-29174262190
       HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                       +kk rls+eq ++LEesF++++  + +++++lareL+l  +qv+vWFqn+RAR+k+ q+E+d++ Lk+  ++l +en rL++e +eLr +
  PSME_00008883-RA 174 KKKPRLSEEQYAILEESFSNNRLPTMNERQALARELNLGVHQVEVWFQNKRARMKSNQTEMDCKLLKKYNETLITENIRLQQELQELR-S 262
                       5999**************666666778999*********************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046184.1E-511139IPR006712HD-ZIP protein, N-terminal
SuperFamilySSF466892.69E-18170230IPR009057Homeodomain-like
PROSITE profilePS5007117.621170230IPR001356Homeobox domain
SMARTSM003892.6E-16172234IPR001356Homeobox domain
PfamPF000463.1E-17174228IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.4E-18174228IPR009057Homeodomain-like
CDDcd000868.61E-15174231No hitNo description
PROSITE patternPS000270205228IPR017970Homeobox, conserved site
SMARTSM003409.4E-14230273IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MDQHCDTELH LGLGLSISSA TTSRKEDLEY DSRRAVQGSP LQLNLSPLTS VPLPPSGSSA  60
RIASGSLAWK KTSPQIDGGS GEQRSPGEAK AAFSQVPVSR RLDVNNFLAL SRHNEEATAI  120
NVSSSNSRVN TSAISSDSGY RMDFKRMQAA TEELENDKAC SRVHTDVEEK GATKKKPRLS  180
EEQYAILEES FSNNRLPTMN ERQALARELN LGVHQVEVWF QNKRARMKSN QTEMDCKLLK  240
KYNETLITEN IRLQQELQEL RSLKLAPTAT IAVCPSCNRI AAASNSRPFD WATP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NKN42e-70A9NKN4_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22800.17e-28HD-ZIP family protein