PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00008891-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 274aa    MW: 30406.5 Da    PI: 8.241
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00008891-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.6e-19174225256
               AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 
                       +y+GVr+++ +g++vAeIrdp     k++r++lg+f taeeAa a+++a+ +++g+
  PSME_00008891-RA 174 HYRGVRQRR-WGKFVAEIRDP---ArKSARVWLGTFNTAEEAALAYDHAAFRIRGA 225
                       8*****998.**********8...5567*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.86E-30173234No hitNo description
Gene3DG3DSA:3.30.730.107.1E-32173233IPR001471AP2/ERF domain
PROSITE profilePS5103223.788174232IPR001471AP2/ERF domain
SMARTSM003801.2E-36174238IPR001471AP2/ERF domain
SuperFamilySSF541716.02E-23174234IPR016177DNA-binding domain
PfamPF008471.0E-13174224IPR001471AP2/ERF domain
PRINTSPR003671.6E-10175186IPR001471AP2/ERF domain
PRINTSPR003671.6E-10198214IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MHTNSLLYNP RSLHNWKTEK SGLLCSSLPP SQLSIEMEFN FCDSSESAVD QSINMQLDFI  60
RRHLLEVPDD DDIQINNSST SSSIFFSSTV IASCSWDYIH ATATATATAS DSCQNSGNRS  120
TFEDNQNEFT QYSPSSSSSS SVSAVTRTEE AVNVNPRPHE EETAETKHMS KGKHYRGVRQ  180
RRWGKFVAEI RDPARKSARV WLGTFNTAEE AALAYDHAAF RIRGAKALLN FPLSFASNSV  240
NGSAVGHMAH KRKRRTAEEG KAWSRRSCGN GSGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-30170237168ATERF1
3gcc_A1e-30170237168ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NMA31e-54A9NMA3_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.14e-24ethylene responsive element binding factor 1