PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00008897-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 247aa    MW: 27419.1 Da    PI: 7.8764
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00008897-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83.2e-19147198256
               AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 
                       +y+GVr+++ +g++vAeIrdp     kr+r++lg+f taeeAa a+++a+ +++g+
  PSME_00008897-RA 147 HYRGVRQRR-WGKFVAEIRDP---TrKRARVWLGTFNTAEEAALAYDHAAFRIRGA 198
                       7*****998.**********8...3346*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.0E-32146206IPR001471AP2/ERF domain
CDDcd000188.97E-30147207No hitNo description
PfamPF008477.0E-14147197IPR001471AP2/ERF domain
PROSITE profilePS5103223.828147205IPR001471AP2/ERF domain
SMARTSM003803.2E-38147211IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-23147207IPR016177DNA-binding domain
PRINTSPR003671.4E-10148159IPR001471AP2/ERF domain
PRINTSPR003671.4E-10171187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MEFNFCYSSE SAVEIAAGRD QGINMQLEFI RHHLLELDDD EIKIKDVKHA PPNYPDSSTS  60
SISFSSTVIA SCSWDYIHAT ATAIASDSCQ NSGNRSTFED NQNEFTQYYS SSSSVSAVTR  120
REEAVNVNPR PQEEDTGETK HNSKGRHYRG VRQRRWGKFV AEIRDPTRKR ARVWLGTFNT  180
AEEAALAYDH AAFRIRGAKA LLNFPVSFAS NSVNGPAVGH MTHKRKGGTA EEGKACNCRS  240
CGNGSRN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-30143206164ATERF1
3gcc_A4e-30143206164ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NMA37e-58A9NMA3_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.12e-22ethylene responsive element binding factor 1