PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00009011-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

HSF

Protein Properties

Length: 245aa MW: 28126.6 Da PI: 7.8675

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00009011-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	113.2	1.8e-35	13	104	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 Fl+k+y++++d++++ ++sws ++nsf+v++++ef+ +Lp+yFkhsnf+SFvRQLn+YgF+k++ e+ weF+++ F +g+++ll PSME_00009011-RA 13 FLTKTYDMVDDPATNAMVSWSPSSNSFIVWNPTEFSGVLLPTYFKHSNFSSFVRQLNTYGFHKIDPER---------WEFANEGFLRGHRHLL 96 9******************999*************************************999.........************ PP XXXXXXXX CS HSF_DNA-bind 95 ekikrkks 102 ++i+r+k PSME_00009011-RA 97 KNIHRRKP 104 ***985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46785	3.26E-35	8	102	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	1.7E-38	9	102	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.2E-59	9	102	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.3E-19	13	36	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	2.1E-31	13	102	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.3E-19	51	63	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	52	76	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.3E-19	64	76	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MPPNGSSNGP PPFLTKTYDM VDDPATNAMV SWSPSSNSFI VWNPTEFSGV LLPTYFKHSN 60 FSSFVRQLNT YGFHKIDPER WEFANEGFLR GHRHLLKNIH RRKPVHSHSQ QQQKGESLSG 120 GACVEIKQLE DETEKLRQEK QGLVIELVRL KQHQQGTEFD LQSMEERLQV MEQRQHRMMA 180 FLAKAVQNPN FVAQLVQHHD KIAHIATTNK KRRLPNHDEV LEIGENGCTG SQIVRYDHDS 240 ASYIG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	3e-26	1	102	14	129	Heat shock factor protein 1
5d5v_B	3e-26	1	102	14	129	Heat shock factor protein 1
5d5v_D	3e-26	1	102	14	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not induced by heat stress. {ECO:0000269\|PubMed:18064488}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT117589	0.0	BT117589.1 Picea glauca clone GQ03904_J01 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006854048.2	1e-100	heat stress transcription factor A-1 isoform X1
Swissprot	Q84T61	5e-90	HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBL	A0A0D6R070	1e-100	A0A0D6R070_ARACU; Uncharacterized protein
STRING	ERN15515	3e-99	(Amborella trichopoda)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16820.2	2e-86	heat shock factor 3

Publications ? help Back to Top
Chauhan H,Khurana N,Agarwal P,Khurana P Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Mol. Genet. Genomics, 2011. 286(2): p. 171-87 [PMID:21792744]