PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00009194-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family SBP
Protein Properties Length: 66aa    MW: 7093.17 Da    PI: 10.0098
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00009194-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP53.85e-171366144
                      --SSTT-----TT--HHHHHTT--HHHHT-S-EE..........ETTEEEEE-T CS
               SBP  1 lCqvegCeadlseakeyhrrhkvCevhskapvvl..........vsgleqrfCq 44
                      +Cq+egC+adl++ak+yhrrhkvCe+hska++v+          + g++qrfCq
  PSME_00009194-RA 13 RCQAEGCKADLTNAKHYHRRHKVCEFHSKATSVVtggvkatsvvTGGVQQRFCQ 66
                      6***************************98876511111111115678899998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.2E-18866IPR004333Transcription factor, SBP-box
PROSITE profilePS5114114.6991166IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.58E-161266IPR004333Transcription factor, SBP-box
PfamPF031102.3E-131466IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 66 aa     Download sequence    Send to blast
MPLAIPPASQ VARCQAEGCK ADLTNAKHYH RRHKVCEFHS KATSVVTGGV KATSVVTGGV  60
QQRFCQ
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. Binds specifically to the 5'-GTAC-3' core sequence. Involved in development and floral organogenesis. Required for ovule differentiation, pollen production, filament elongation, seed formation and siliques elongation. Also seems to play a role in the formation of trichomes on sepals. May positively modulate gibberellin (GA) signaling in flower. {ECO:0000269|PubMed:12671094, ECO:0000269|PubMed:16095614, ECO:0000269|PubMed:17093870}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008775519.11e-18squamosa promoter-binding-like protein 10 isoform X1
RefseqXP_017702534.11e-18squamosa promoter-binding-like protein 10 isoform X2
SwissprotQ8GXL32e-16SPL8_ARATH; Squamosa promoter-binding-like protein 8
TrEMBLA0A2G5DBC71e-19A0A2G5DBC7_AQUCA; Uncharacterized protein
STRINGAquca_024_00116.13e-20(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.24e-20squamosa promoter binding protein-like 8
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Xing S, et al.
    SPL8 Acts Together with the Brassinosteroid-Signaling Component BIM1 in Controlling Arabidopsis thaliana Male Fertility.
    Plants (Basel), 2013. 2(3): p. 416-28
    [PMID:27137384]