PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00009350-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 298aa    MW: 32913.8 Da    PI: 4.9715
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00009350-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.1e-1893143155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  PSME_00009350-RA  93 PVYRGVRMRT-WGKWVSEIREPKK---KSRIWLGTFPTPEMAARAHDVAALSIKG 143
                       68*****998.**********854...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.9E-1293143IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-3194153IPR001471AP2/ERF domain
SMARTSM003802.5E-3694157IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-2194153IPR016177DNA-binding domain
PROSITE profilePS5103223.27594151IPR001471AP2/ERF domain
PRINTSPR003673.9E-1095106IPR001471AP2/ERF domain
CDDcd000182.34E-3195153No hitNo description
PRINTSPR003673.9E-10117133IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MCTLHWSSTS NSSSVSDFIF PSPDSILNAA AEYSFITGSS SDSALRLKQK RMQKRRAEEI  60
NNADESGEEE LSAGVCKRDK LQQGVRVEGK RHPVYRGVRM RTWGKWVSEI REPKKKSRIW  120
LGTFPTPEMA ARAHDVAALS IKGKSAFLNF PHSASSLPRP ATLSPRDIQA AAAVAAAEFD  180
MPSDEDLSED RSLDPAGTNI NVIPSAESRP INEGAAAVSA SNSGWVSSFL WENERMIIDD  240
DILFDLPNFL RNMAEGLLVA PPWMLEPEEL YGHSCNSVDH FYDVNGSICA ETSLWNYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-2081152173Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026439220.18e-48ethylene-responsive transcription factor TINY-like isoform X2
TrEMBLB8LM171e-111B8LM17_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.13e-44ERF family protein