PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00009389-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 192aa    MW: 21193 Da    PI: 5.5759
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00009389-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601376.7e-43251241100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +CaaCk+lrr+C ++C+lapyfp+++ +kfa +h++FGasn++kll++lp e+r+da+ss+vyeA+ar+rdPvyG++g+++++q+ql+ql+++
  PSME_00009389-RA  25 PCAACKMLRRRCGEKCMLAPYFPSNDLHKFATAHRIFGASNIIKLLQDLPAEQRTDAVSSMVYEANARLRDPVYGCAGIVFQMQSQLCQLQSQ 117
                       7******************************************************************************************** PP

            DUF260  94 lallkee 100
                       la++++e
  PSME_00009389-RA 118 LATAQAE 124
                       ***9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.50224125IPR004883Lateral organ boundaries, LOB
PfamPF031957.3E-4225122IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MAPSHQSFSE NMQTVGSFRG HAPSPCAACK MLRRRCGEKC MLAPYFPSND LHKFATAHRI  60
FGASNIIKLL QDLPAEQRTD AVSSMVYEAN ARLRDPVYGC AGIVFQMQSQ LCQLQSQLAT  120
AQAEILTMRL QQANLLALVA GSSHADNAET TRPVSPSSSA LSQESDDQQN DLIYFEGEDP  180
LQLWDVSVWK EL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-382412610112LOB family transfactor Ramosa2.1
5ly0_B2e-382412610112LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0845570.0EF084557.1 Picea sitchensis clone WS0271_N08 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009409552.19e-61PREDICTED: LOB domain-containing protein 1-like
SwissprotQ9LQR05e-55LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA9NTB01e-103A9NTB0_PICSI; Uncharacterized protein
STRINGGSMUA_Achr7P15500_0013e-60(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.12e-48LOB domain-containing protein 1