PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00009490-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family B3
Protein Properties Length: 187aa    MW: 21935.4 Da    PI: 8.7808
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00009490-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.14.2e-1067157497
                       E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkl.iyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                       +  +++ ++sg +++   f++++ ++  ++   t++d +  sW+++   y ++++r v+t GW+eF++ ++ k+gD+++ +  +++ f  +++
  PSME_00009490-RA  67 TIQRKYLGRSGKMYFLVIFMKKYLSE--SQGIATFKDCDWFSWRIEWyAYLQSGRRLVFTIGWSEFASNHNGKDGDILLVEILNSEHF--KIQ 155
                       556678899999***********433..23379*************9456999999*************************7766777..777 PP

                       EE CS
                B3  96 vf 97 
                       +f
  PSME_00009490-RA 156 IF 157
                       76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.8E-1459158IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.14E-1260159IPR015300DNA-binding pseudobarrel domain
CDDcd100178.71E-1062158No hitNo description
PROSITE profilePS508639.31964160IPR003340B3 DNA binding domain
SMARTSM010197.9E-564160IPR003340B3 DNA binding domain
PfamPF023622.7E-967157IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MEIRAQVIWT GKSWLLVDNE TSMMGTKGIF KNRYKPHVGE GLLSPNRDMV IDFVKDIFTE  60
HPSFARTIQR KYLGRSGKMY FLVIFMKKYL SESQGIATFK DCDWFSWRIE WYAYLQSGRR  120
LVFTIGWSEF ASNHNGKDGD ILLVEILNSE HFKIQIFPGE ICMAIKENKA LGCTREVGFQ  180
EFFHYML
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.17e-07B3 family protein