PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00009499-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

SBP

Protein Properties

Length: 458aa MW: 50338.3 Da PI: 8.2215

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00009499-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	117.1	9.1e-37	2	79	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+egC+a l++ak+yhr +kvCe+hska++v++s ++qrfCqqCsrfh l efDe krsCr+rLa+hn+ rrk+q+ PSME_00009499-RA 2 RCQAEGCKAALTNAKHYHRLYKVCEFHSKATSVVTSSVQQRFCQQCSRFHLLAEFDEVKRSCRKRLADHNRLRRKPQT 79 6**************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF103612	2.35E-34	1	82	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	29.539	1	77	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:4.10.1100.10	3.3E-29	1	64	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.7E-27	3	76	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence Send to blast
PRCQAEGCKA ALTNAKHYHR LYKVCEFHSK ATSVVTSSVQ QRFCQQCSRF HLLAEFDEVK 60 RSCRKRLADH NRLRRKPQTN TIVPAVSSAE AATALKVEDD DNNVSGSCNN TSRGTVQTSV 120 AAVASPVLRA EAQALLNAMS LPLILQNTKG SQMNNNSNSN SNSNTTTTNN PMLQQPNSQK 180 VPVANQQICV AAEWRRTQGT EFISVVALCG NEPPPAMDNI LHPIISHEKA NVEAFSASFV 240 QNFLPLTGSM SSRELGSSQW MVGSSDSASS LEAGQQMFSL LEPAERHNRT KEQAQAARLV 300 EYLSHRHQGG LNSKEPVDGN PEVKFSDMQN SLRPFGQSIY DGSMIGFTDE PVELLGLVSP 360 KSMPQVSGTI AVKSVFLMLF RPCEGCICLI EFRSLAMIII RAIPLLLNST LHFSIFCGVK 420 SCNRSPILDN EAPGLFQVFS FLSMNKQTQL FLMNNMLH

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence Send to blast

PRCQAEGCKA ALTNAKHYHR LYKVCEFHSK ATSVVTSSVQ QRFCQQCSRF HLLAEFDEVK  60
RSCRKRLADH NRLRRKPQTN TIVPAVSSAE AATALKVEDD DNNVSGSCNN TSRGTVQTSV  120
AAVASPVLRA EAQALLNAMS LPLILQNTKG SQMNNNSNSN SNSNTTTTNN PMLQQPNSQK  180
VPVANQQICV AAEWRRTQGT EFISVVALCG NEPPPAMDNI LHPIISHEKA NVEAFSASFV  240
QNFLPLTGSM SSRELGSSQW MVGSSDSASS LEAGQQMFSL LEPAERHNRT KEQAQAARLV  300
EYLSHRHQGG LNSKEPVDGN PEVKFSDMQN SLRPFGQSIY DGSMIGFTDE PVELLGLVSP  360
KSMPQVSGTI AVKSVFLMLF RPCEGCICLI EFRSLAMIII RAIPLLLNST LHFSIFCGVK  420
SCNRSPILDN EAPGLFQVFS FLSMNKQTQL FLMNNMLH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-25	3	76	11	84	squamosa promoter binding protein-like 4

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	59	76	KRSCRKRLADHNRLRRKP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02065.1	3e-37	squamosa promoter binding protein-like 8