PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00009547-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 346aa    MW: 39589.6 Da    PI: 8.6155
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00009547-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.76.1e-18266316255
               AP2   2 gykGVrwdkkrgrWvAeIrdpseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr ++ +g+++AeIrd       + +r +lg+f taeeAa a+++a+ k++g
  PSME_00009547-RA 266 HYRGVRKRP-WGKFAAEIRD----SarQGARLWLGTFTTAEEAALAYDQAAYKMRG 316
                       7********.**********....33334*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.9E-31265325IPR001471AP2/ERF domain
PROSITE profilePS5103223.42266324IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-22266325IPR016177DNA-binding domain
SMARTSM003802.9E-36266330IPR001471AP2/ERF domain
CDDcd000184.36E-29266326No hitNo description
PfamPF008474.4E-13266316IPR001471AP2/ERF domain
PRINTSPR003672.7E-10267278IPR001471AP2/ERF domain
PRINTSPR003672.7E-10290306IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MLSVTMLIHI QKKNITSKNM KTSKSAESQR LSFLSLRHVM AMNRRSQEAE HTEMSVLDRI  60
RIHLLGDSDG QDFESSFYQT GNCRSDPRNS IPVEENFIWS ALACDSVADD LPETKKETST  120
PAVNSSPLSV SDSVTRHESL DWDKFPVSWP ELRNYVSVTP PSFSSSLTSS WAKFPFGEND  180
SDDIIYSRLF KEAAKKKWMS VTPKEQMETE TKKEAAIFPV KKEAYKEDII FPVKKDIVFP  240
VKKEQDVRQE ARTQQPAAKK KNLGRHYRGV RKRPWGKFAA EIRDSARQGA RLWLGTFTTA  300
EEAALAYDQA AYKMRGSRAL LNFPHLVTAE NNNNMQWFEF DEEEGT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-30264324363ATERF1
3gcc_A7e-30264324363ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLC0PQI33e-95C0PQI3_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.12e-27ethylene responsive element binding factor 1