PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00009599-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HD-ZIP
Protein Properties Length: 755aa    MW: 82609.1 Da    PI: 6.0319
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00009599-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.22.1e-21111166156
                       TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       +++ +++t++q++eLe+lF+++++p++++r +++k+l+L++rqVk+WFqNrR+++k
  PSME_00009599-RA 111 KKRYHRHTPQQIQELEALFKECPHPDEKQRLDISKRLNLETRQVKFWFQNRRTQMK 166
                       688999***********************************************999 PP
2START223.18.6e-702955181206
                       HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS
             START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 
                       ela++ ++el+k+a+a+e +W  s     e +n++e++++f+++ +       +ea r++g+v+ ++ +lve+l+d+  +W+e+++    +a+
  PSME_00009599-RA 295 ELALASMDELFKMAQADETLWIPSLdagkETLNYEEYMRQFPSNITpkpigLATEATRETGMVITNSLNLVETLMDVD-RWKEMFPcmisRAA 386
                       57899********************9***************99999********************************.************** PP

                       EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEE CS
             START  81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtw 166
                       +++vissg      galqlm+aelq+lsplvp R+++f+R+++q+ +g+w++vdvS+d+ ++++  s+++++++lpSg+li++++ng+skvtw
  PSME_00009599-RA 387 MIDVISSGmggtrnGALQLMYAELQVLSPLVPsREVYFLRFCKQHAEGVWAVVDVSIDNLRENS-PSGFMKCRRLPSGCLIQDMPNGYSKVTW 478
                       ****************************************************************.7*************************** PP

                       EE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
             START 167 vehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                       veh+++++r +h l+rsl++sg+a+ga++w+atlqrqce+
  PSME_00009599-RA 479 VEHAEYDDRGVHRLYRSLLNSGMAFGAQRWLATLQRQCEC 518
                       **************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.92E-2093168IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-2196162IPR009057Homeodomain-like
PROSITE profilePS5007117.313108168IPR001356Homeobox domain
SMARTSM003892.2E-19109172IPR001356Homeobox domain
CDDcd000864.28E-19110168No hitNo description
PfamPF000465.8E-19111166IPR001356Homeobox domain
PROSITE patternPS000270143166IPR017970Homeobox, conserved site
PROSITE profilePS5084846.607286521IPR002913START domain
SuperFamilySSF559613.61E-41289518No hitNo description
CDDcd088756.38E-131290517No hitNo description
PfamPF018524.4E-60295518IPR002913START domain
SMARTSM002341.4E-60295518IPR002913START domain
Gene3DG3DSA:3.30.530.201.2E-5380513IPR023393START-like domain
SuperFamilySSF559612.93E-17547747No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009827Biological Processplant-type cell wall modification
GO:0042335Biological Processcuticle development
GO:0043481Biological Processanthocyanin accumulation in tissues in response to UV light
GO:0048765Biological Processroot hair cell differentiation
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 755 aa     Download sequence    Send to blast
MSFGGFLDSG SGGKLISASD HNMASGAIAQ PRLVSPGVMP MARATKNIYT SPGLSLALTS  60
GIEGQGEVGA SVGECEQGKS KDEEYESRSG SDNMDGGSGD EQDAADNPPR KKRYHRHTPQ  120
QIQELEALFK ECPHPDEKQR LDISKRLNLE TRQVKFWFQN RRTQMKTQLE RHENSILRQE  180
NEKLRSENLS IRDAMRNPIC TNCGGPAVLG EMSFEEQQLR IENARLKEEL DRLCALAGKF  240
FGRPIHSMPS VPHIPKSSLD LGVGGMPSAG ADLMHGHAGG RTGNMIGIER SMLAELALAS  300
MDELFKMAQA DETLWIPSLD AGKETLNYEE YMRQFPSNIT PKPIGLATEA TRETGMVITN  360
SLNLVETLMD VDRWKEMFPC MISRAAMIDV ISSGMGGTRN GALQLMYAEL QVLSPLVPSR  420
EVYFLRFCKQ HAEGVWAVVD VSIDNLRENS PSGFMKCRRL PSGCLIQDMP NGYSKVTWVE  480
HAEYDDRGVH RLYRSLLNSG MAFGAQRWLA TLQRQCECLA ILIATANVPR DPTAIPTPNG  540
RRSMLRLAQR MTDNFCAGVS ASTVHTWNKL SGNIDDDVRV MTRKSVDDPG EPPGVVLSAA  600
TSVWLPVSPQ RLFDFLRDER LRSEAMNSNQ SSSMLILQET CTDASGSLVV YAPVDIPAMH  660
VVMSGGDPAY VALLPSGFAI LPDGPECRPL ALNPTGNGVG VNSPRVGGSL LTVAFQILVN  720
SLPTAKLTVE SVETVNNLIS CTVQKIKAAL HCEDA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00421DAPTransfer from AT4G00730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3288420.0AF328842.1 Picea abies homeodomain protein HB2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002272264.20.0PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1
RefseqXP_010661561.10.0PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLQ8S5550.0Q8S555_PICAB; Homeodomain protein HB2
STRINGVIT_15s0048g02000.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]