PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00009722-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family C2H2
Protein Properties Length: 313aa    MW: 36003.4 Da    PI: 6.405
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00009722-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.00094173197123
                       EEETTTTEEESSHHHHHHHHHH..T CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirt..H 23 
                       + C+ C+k ++  ++++ H+++  H
  PSME_00009722-RA 173 FFCELCNKQYKLAMEFEAHLSSydH 197
                       67*****************987555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004432.9E-1776121IPR000467G-patch domain
PROSITE profilePS5017416.85378123IPR000467G-patch domain
PfamPF015851.9E-1579119IPR000467G-patch domain
PfamPF121715.3E-5173200IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280175197IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MDVVAQQSRF VKMENWWSNS QNGMSAQEKR QREREEAYEE SLAEDLGEDF RLPISHRPTE  60
NLDTDNLEQA SVDTQLTSSN VGFRLLQKMG WKGKGLGKEE QGIIEPIKAG VREAKLGVGK  120
QEQDDYFTSE ENIQRKKLEV EVEETEELTK KREVVAEREQ KIQSEVKEIR KVFFCELCNK  180
QYKLAMEFEA HLSSYDHNHR KRFKEMKEMH SASSRDDRQK REQLRQEREM AKFVQMSQQL  240
QEESGAVPAS GTARTATSLA VQEQRKTLKF GFATKAVPSK VVPNTLTSLG ATSKKAKVLS  300
KVSSIFRDDS DEE
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1107660.0BT110766.1 Picea glauca clone GQ03227_J06 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010241427.11e-155PREDICTED: G patch domain-containing protein 8-like isoform X1
RefseqXP_010241428.11e-155PREDICTED: G patch domain-containing protein 8-like isoform X1
TrEMBLA0A1U7Z2G91e-154A0A1U7Z2G9_NELNU; G patch domain-containing protein 8-like isoform X1
STRINGXP_010241427.11e-155(Nelumbo nucifera)