PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00009747-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

bHLH

Protein Properties

Length: 399aa MW: 44412.9 Da PI: 7.6914

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00009747-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.6	7.2e-06	208	234	4	30
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 4 ahnerErrRRdriNsafeeLrellPka 30 h ++Er+RR+++ ++f L ++P + PSME_00009747-RA 208 DHIMAERKRREKLSQRFIALSAIVPGL 234 699**********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	8.505	204	262	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.76E-6	207	238	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.9E-6	208	236	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.38E-5	209	238	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence Send to blast
MEDPSLGGVC NSELAIPTVE QLNELIGYNS NLGYEADVSL TGYPSNVKLP AKLSHFQGVR 60 PSTGYLGYER PAKQSKSKSN KSSDSFYPGF SNEVSTSPIY YPNPQQNLQH NQPENYFASF 120 FKIKGDERYE NMAQTTPGVK AKIVAYGEHD HSRISDIGCS DMDAAFSVFS SNFFRSNHIS 180 RDMRISKLTA ENRHSNQVPN KGSGNSKDHI MAERKRREKL SQRFIALSAI VPGLKKDRIK 240 ALEEQPPKGT VQSVVYLNKK DLFNHDQDAP DQDSSEINNS SSSSEREVTE GLVSPQIEIR 300 VVNRNVLIHV HCKKRNGLLL NLFAELIKLQ LTVVNASILS FSETNLDMTF NVQCLFFLDG 360 GGMRLHSGAH SESPANFVGV RELHPIYHIC LGLVPAYAL

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence Send to blast

MEDPSLGGVC NSELAIPTVE QLNELIGYNS NLGYEADVSL TGYPSNVKLP AKLSHFQGVR  60
PSTGYLGYER PAKQSKSKSN KSSDSFYPGF SNEVSTSPIY YPNPQQNLQH NQPENYFASF  120
FKIKGDERYE NMAQTTPGVK AKIVAYGEHD HSRISDIGCS DMDAAFSVFS SNFFRSNHIS  180
RDMRISKLTA ENRHSNQVPN KGSGNSKDHI MAERKRREKL SQRFIALSAI VPGLKKDRIK  240
ALEEQPPKGT VQSVVYLNKK DLFNHDQDAP DQDSSEINNS SSSSEREVTE GLVSPQIEIR  300
VVNRNVLIHV HCKKRNGLLL NLFAELIKLQ LTVVNASILS FSETNLDMTF NVQCLFFLDG  360
GGMRLHSGAH SESPANFVGV RELHPIYHIC LGLVPAYAL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	212	217	ERKRRE
2	213	218	RKRREK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	7e-24	bHLH family protein