PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00009763-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

SBP

Protein Properties

Length: 323aa MW: 34742.3 Da PI: 7.0173

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00009763-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	34.1	7.4e-11	20	45	53	78
TT--SS--S-STTTT-------S--- CS SBP 53 sefDeekrsCrrrLakhnerrrkkqa 78 efDe k+sCr+rLa+hn+rrrk+q+ PSME_00009763-RA 20 AEFDEVKQSCRKRLADHNRRRRKPQT 45 79*********************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	10.656	1	43	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	4.32E-8	20	48	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MLPPALSQAV SNNVSANSAA EFDEVKQSCR KRLADHNRRR RKPQTNTIVP AVSSAEAATA 60 LKVEDDDNNV SGSCNNTSRG TVQTSVAAAA FPVLRTEAQA LLNAMSLPLI LQITKGSQMN 120 NNSNTNTNSN SNTTTNNPML QQPNSQKVPV ANQQYVQQQN GGGHKGPNLS LSSPSVGMSL 180 CNQRQTTAQD YSGLELALPW LRTTSDYGGS SHRPPPAMDN ILHPIISHEK ENVEAFSASS 240 VQNFLPLTGS MSSRELGSSQ WMVGSSDSAS SLEAGQQMFS LLELAEHHNR TEEQAQTARP 300 VEYLSHRHQG GLNSKEPVDG NPK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	2e-07	SBP family protein