PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00009880-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 83aa    MW: 8910.53 Da    PI: 8.8602
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00009880-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.80.0004525443251
                      ..TTS-STCHHHHHHHHHHH CS
               HLH 32 kapskKlsKaeiLekAveYI 51
                      +++++Kl+K e+++ Av  I
  PSME_00009880-RA 25 RGNNEKLEKGETVRIAVGMI 44
                      789**************888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd021202.01E-18583No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 83 aa     Download sequence    Send to blast
MAKQLCLPGA LDPLKVKGKI FVCLRGNNEK LEKGETVRIA VGMILCNAPK GNEDISPDLY  60
SLPATKLNAI DGAAVFYYIK STA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011628304.23e-21subtilisin-like protease SBT5.3
RefseqXP_020531131.13e-21subtilisin-like protease SBT5.3
RefseqXP_020531132.13e-21subtilisin-like protease SBT5.3
TrEMBLU5D9E73e-20U5D9E7_AMBTC; Uncharacterized protein
TrEMBLU5DCG97e-20U5DCG9_AMBTC; Uncharacterized protein
STRINGERN191095e-21(Amborella trichopoda)
STRINGERN191121e-20(Amborella trichopoda)