PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00009984-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

NAC

Protein Properties

Length: 275aa MW: 31633.4 Da PI: 6.8662

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00009984-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	138.1	5.5e-43	21	146	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 pGfrF Pt+eelv +yLkk v+g + + ++ i+++d+y+++Pw+Lp ++ +e +w fF++r +k+ r+nr+t sgyWkatg d++v PSME_00009984-RA 21 LPGFRFYPTEEELVGFYLKKTVQGGQQPQFDRiIPTLDLYRYDPWELPGLASVGEMQWLFFVPRCHKKC--ARPNRMTVSGYWKATGADRTVR 111 59*******************9996655544***********77778999***999865..7******************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 + + +g kktLvfykg++p+g+ktdW+m+eyr+ PSME_00009984-RA 112 NDLLQCIGQKKTLVFYKGKNPRGQKTDWIMNEYRM 146 99999**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.79E-46	19	168	IPR003441	NAC domain
PROSITE profile	PS51005	50.294	20	168	IPR003441	NAC domain
Pfam	PF02365	1.7E-22	22	146	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MAVQLEETYT DDTPQRDLMS LPGFRFYPTE EELVGFYLKK TVQGGQQPQF DRIIPTLDLY 60 RYDPWELPGL ASVGEMQWLF FVPRCHKKCA RPNRMTVSGY WKATGADRTV RNDLLQCIGQ 120 KKTLVFYKGK NPRGQKTDWI MNEYRMPDMS LSAPKKKMDL VLCRIYRKAV TQKSMEQLVK 180 PHHLEREEPV VTDMSIEQRV NSDEVEKKEP VISGDEGKSH SILDSVSCHS NPLVSLHHGV 240 VCSSLSEASD EARIFEGLVP IIFYEEIMEL KTPKA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-40	22	168	19	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-40	22	168	19	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-40	22	168	19	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-40	22	168	19	165	NO APICAL MERISTEM PROTEIN
4dul_A	2e-40	22	168	19	165	NAC domain-containing protein 19
4dul_B	2e-40	22	168	19	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008791987.1	3e-62	NAC domain-containing protein 22-like
Swissprot	Q10S65	3e-56	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	A0A075M5N5	5e-92	A0A075M5N5_9SPER; NAC domain protein
STRING	Pavir.Db00028.1.p	3e-61	(Panicum virgatum)
STRING	XP_008791987.1	1e-61	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.1	4e-56	NAC domain containing protein 35

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]