PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00009987-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 150aa    MW: 16659.2 Da    PI: 10.6908
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00009987-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.21.7e-121660145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                      rg+WT+ Ed+ l + +  +G g+W+++++  g++R++k+c+ rw 
  PSME_00009987-RA 16 RGPWTQGEDLCLTQFIGAHGEGCWSSVPKNTGLKRCGKSCRFRWV 60
                      89******************************************5 PP
2Myb_DNA-binding52.41.2e-1669112146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg+ +++E++l+++++k+lG++ W++Ia +++ gRt++++k++w++
  PSME_00009987-RA  69 RGNISPDEEDLIIRLHKLLGNR-WSLIAGRIP-GRTDNEVKNYWNT 112
                       7899******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.2251163IPR017930Myb domain
SMARTSM007172.5E-91565IPR001005SANT/Myb domain
SuperFamilySSF466893.4E-2615110IPR009057Homeodomain-like
PfamPF002492.8E-111661IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-181770IPR009057Homeodomain-like
CDDcd001673.39E-71863No hitNo description
PROSITE profilePS5129423.83764118IPR017930Myb domain
SMARTSM007171.7E-1568116IPR001005SANT/Myb domain
PfamPF002494.2E-1569112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-2371117IPR009057Homeodomain-like
CDDcd001675.42E-1273114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
PGKGPETFQV AGGIDRGPWT QGEDLCLTQF IGAHGEGCWS SVPKNTGLKR CGKSCRFRWV  60
IYLRPSVKRG NISPDEEDLI IRLHKLLGNR WSLIAGRIPG RTDNEVKNYW NTRLNKKGHA  120
TGCIRLKSIK PRKPNISEPA VSLLTPTSAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-24161177107B-MYB
1h8a_C2e-241411725127MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010047392.17e-55PREDICTED: transcription factor WER
SwissprotQ388502e-49MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A059CM762e-53A0A059CM76_EUCGR; Uncharacterized protein
STRINGXP_010047392.13e-54(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.17e-52myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]