PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00010185-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

VOZ

Protein Properties

Length: 190aa MW: 20777.9 Da PI: 5.9158

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00010185-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	161.4	4.9e-50	37	137	1	101
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaa 93 ppp aflgpkcalwdc+ paqgs+w+qdycs+fh ++alneg+pg++pvlrp+gidlkdgllfaal ak+ k gip+cegaat+kspwna+ PSME_00010185-RA 37 PPPEAFLGPKCALWDCPTPAQGSDWCQDYCSNFHGMVALNEGPPGMEPVLRPGGIDLKDGLLFAALGAKTVVKYFGIPKCEGAATKKSPWNAP 129 89******************************************************************************************* PP VOZ 94 elfdlsll 101 + l+ l PSME_00010185-RA 130 GMRSLTCL 137 99887654 PP

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MAQMNRYFDH NLCLSLDPEV EEEHIPKFQG PCPVISPPPE AFLGPKCALW DCPTPAQGSD 60 WCQDYCSNFH GMVALNEGPP GMEPVLRPGG IDLKDGLLFA ALGAKTVVKY FGIPKCEGAA 120 TKKSPWNAPG MRSLTCLFFK GKLLESGSFL TTNKSFPVLM YGTGSNSHHI SELDFGDPDR 180 KHELPCGYVL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT104758	2e-34	BT104758.1 Picea glauca clone GQ02814_H19 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010657013.1	4e-51	PREDICTED: transcription factor VOZ1
Refseq	XP_010924398.1	5e-51	transcription factor VOZ1 isoform X1
Refseq	XP_010924401.1	4e-51	transcription factor VOZ1 isoform X3
Refseq	XP_019079230.1	4e-51	PREDICTED: transcription factor VOZ1
Refseq	XP_021907726.1	2e-51	transcription factor VOZ1
Swissprot	Q9SGQ0	4e-48	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A438EGC1	3e-51	A0A438EGC1_VITVI; Transcription factor VOZ1
STRING	VIT_12s0028g02670.t01	3e-50	(Vitis vinifera)
STRING	evm.model.supercontig_7.6	2e-50	(Carica papaya)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	2e-50	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]