PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00010244-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family CO-like
Protein Properties Length: 563aa    MW: 61868.5 Da    PI: 5.3356
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00010244-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box16.61.7e-05545337
          zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                       ++C+ ++e   + +C+++   lC +C  + H+       H
  PSME_00010244-RA  5 DNICDFCQELSPTVYCRSDTARLCLSCDRHVHNAnalarrH 45
                      589******99*******************9*655555555 PP
2CCT58.91.8e-20506549144
               CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                       R +a+ RYkeK+k R F+K+irY+sRKa+A+ R+RvKGrFvk+ 
  PSME_00010244-RA 506 RGNAMVRYKEKKKLRMFDKRIRYASRKARADVRKRVKGRFVKAG 549
                       77899************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.9E-7350IPR000315B-box-type zinc finger
PROSITE profilePS501199.072350IPR000315B-box-type zinc finger
CDDcd000212.54E-5750No hitNo description
CDDcd000210.002185093No hitNo description
PfamPF062031.3E-15506548IPR010402CCT domain
PROSITE profilePS5101714.872506548IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MSKMDNICDF CQELSPTVYC RSDTARLCLS CDRHVHNANA LARRHLRTLL CDGCNLQPSA  60
VRCHEENISL CQNCDWNIHG SSPTGSQHKR RAINGYTGCP SAAELSGMWG LDGFPNTDAS  120
DSCGESSKNV SGLRAINENI ANSNNRWNTS RNDSSLDCVV AGRKDNTGIA QNLDILAETS  180
PSAPCASSML YAADGLDGST LPAEQSKQNP VVVQQLLDLQ KLPVQSSSQL QKYPEVPPQI  240
WTQVQMDSKV IEPPPVKQME QEFQAQNQHQ WRQQKDQIQG QQDNHQEQQM PSVSPLLLEA  300
QQLKSDANIE RFMQGDSFWQ SNSASEINQL WDPHMQDLGL CEDGDPCNDF NMYDVDLTFE  360
NYEDIFAGSE DHSLSLFGDV GATCSSSEKN VSFADSSDHI DSAPKAPSVS PVGCLLPSSH  420
FPGPVGTTYP VSGTSVQGML GPSRVGDIST SFSAQKPHSS LSLSLSGHSG ESSAADYQDC  480
DVSTRCLKGD PPWRPTSPES VFSQARGNAM VRYKEKKKLR MFDKRIRYAS RKARADVRKR  540
VKGRFVKAGE AYDYDPLSVT GSY
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1008020.0BT100802.1 Picea glauca clone GQ0045_F02 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D6QR800.0A0A0D6QR80_ARACU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.16e-41B-box type zinc finger protein with CCT domain