PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00010378-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

LBD

Protein Properties

Length: 227aa MW: 24829.5 Da PI: 7.0999

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00010378-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	50.5	5.9e-16	2	56	47	101
DUF260 47 kalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 +++p +r +a+ +++yeA+ar+rdPvyG+vg+i lq+q+++l++ela ++++l PSME_00010378-RA 2 RNIPVPKRCEAVVTICYEAQARLRDPVYGCVGHIYYLQHQVKSLENELANVQAQL 56 6778899*******************************************99885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	10.619	1	56	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.5E-14	2	53	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MRNIPVPKRC EAVVTICYEA QARLRDPVYG CVGHIYYLQH QVKSLENELA NVQAQLATRL 60 QAAASLQQAH HHGHSESCLS SAASTGYAGT SSSPYDHHHQ LQDHAAPLSM SFHVPAGASS 120 SAVAAATHAH VNPYTDRLKE ESVPATAFHA LTYTHHLHNI SPLQIEPASF CSTVQQMQDA 180 YLRNRNNIQL MDQQHNDSDQ TGGGELQALA HELLRRNHGA KPHSTSS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00210.1	2e-17	LOB domain-containing protein 31