PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00010394-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

NAC

Protein Properties

Length: 119aa MW: 13767.7 Da PI: 7.9687

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00010394-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	43	1.4e-13	41	106	27	94
NAM 27 kleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 ++++ + i +++y++ePw+Lp + ++ +w+fF+++++k+ r+nr tksgy katg+d+++++ PSME_00010394-RA 41 PFNF-DKIIPIELYQYEPWELPgLVRDVGDGQWFFFVPSHQKKC--VRPNRLTKSGYSKATGSDRKIHR 106 4555.567889*********444455788****99875..7******************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	14.663	12	119	IPR003441	NAC domain
SuperFamily	SSF101941	3.01E-13	38	109	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 119 aa Download sequence Send to blast
MCAKKVCDDG AVQGELMHFP MPQQRSCWVL SEENDTISRL PFNFDKIIPI ELYQYEPWEL 60 PGLVRDVGDG QWFFFVPSHQ KKCVRPNRLT KSGYSKATGS DRKIHRPGLL PQWFSGSEH

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269\|PubMed:17653269}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269\|PubMed:17653269}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008447882.1	1e-14	PREDICTED: protein FEZ-like
Refseq	XP_008791987.1	9e-15	NAC domain-containing protein 22-like
Refseq	XP_028793227.1	1e-14	NAC domain-containing protein 35-like
Swissprot	Q9ZVP8	1e-13	NAC35_ARATH; NAC domain-containing protein 35
TrEMBL	A0A075M5N5	2e-16	A0A075M5N5_9SPER; NAC domain protein
STRING	XP_008447882.1	4e-14	(Cucumis melo)
STRING	XP_008791987.1	3e-14	(Phoenix dactylifera)
STRING	MLOC_37364.1	5e-14	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.2	4e-16	NAC domain containing protein 35

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Okajima K Molecular mechanism of phototropin light signaling. J. Plant Res., 2016. 129(2): p. 149-57 [PMID:26815763] Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii. J Phys Chem B, 2018. 122(6): p. 1801-1815 [PMID:29355019]