PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00010577-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 427aa    MW: 48042 Da    PI: 8.023
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00010577-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.71.8e-12265311455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        h ++Er+RR+++ ++f  L  l+P +     kK++Ka++L  A++Y+k+Lq
  PSME_00010577-RA 265 DHIMAERKRREKLSQRFIALSALVPGL-----KKMDKASVLGDAIKYVKQLQ 311
                       599************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.586261310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.72E-17264321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-17265321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.76E-13266315No hitNo description
PfamPF000104.0E-10266311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.8E-15267316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MTETHEGKIT VQRRKLDGLG VYQRQLSSYL CNSVWRGSFL GARQELYEFA PTSFGISFYE  60
MEDPVRAGQY NIELAEQLKE MMDYQNNFGY ASDTSLAAYR SNVKLSGTVS RLGIRPSGEY  120
LGSERPAKQS KPNNWWDSPF HDQLRFSSKA SISPSICVPN SQHKLQYQKL GNHFTNIFNV  180
NGDETYTNVA QISPGVQAET VAYGGDDLSC TSDISHSHRD AAFNVFSDQP LRVNPGPSDM  240
RISGAIVRNG NFNNPPNKTS GHTKDHIMAE RKRREKLSQR FIALSALVPG LKKMDKASVL  300
GDAIKYVKQL QDKIKSLEEQ APKDTVQSVV YLNKEDQEDS DKASALSINS SSDKYVAQKL  360
LIPEIETRIV NRNVLIHIHC QKRKHLLVEF VAELEKLQLT VVNATVLSFS ETSFDLTFNA  420
QKDDHLH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-14265314857Transcription factor MYC2
5gnj_B5e-14265314857Transcription factor MYC2
5gnj_E5e-14265314857Transcription factor MYC2
5gnj_F5e-14265314857Transcription factor MYC2
5gnj_G5e-14265314857Transcription factor MYC2
5gnj_I5e-14265314857Transcription factor MYC2
5gnj_M5e-14265314857Transcription factor MYC2
5gnj_N5e-14265314857Transcription factor MYC2
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1269274ERKRRE
2270275RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.14e-42bHLH family protein