PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00010621-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WRKY
Protein Properties Length: 527aa    MW: 56170.7 Da    PI: 8.9512
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00010621-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.41.5e-33273330260
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                        DgynWrKYGqK+vkgsefprsYY+Ct+++Cpvkkkvers+ d++v+ei+Y+geH h+k
  PSME_00010621-RA 273 ADGYNWRKYGQKQVKGSEFPRSYYKCTHPNCPVKKKVERSH-DGQVTEIVYKGEHSHPK 330
                       6****************************************.***************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-29269331IPR003657WRKY domain
SuperFamilySSF1182906.02E-26271331IPR003657WRKY domain
SMARTSM007749.0E-38272330IPR003657WRKY domain
PfamPF031061.1E-26274329IPR003657WRKY domain
PROSITE profilePS5081123.824274331IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-9446498IPR003657WRKY domain
SuperFamilySSF1182907.72E-6453475IPR003657WRKY domain
PROSITE profilePS5081111.749456499IPR003657WRKY domain
SMARTSM007740.0067461509IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MEGKESRSSV AIGDGGGGVL LTKPSPSRPS LALPPRPEGG LGMSSISPGP MTLASSFFSD  60
HDADSECKSF SQLLAGAMAS PPPVKDNKPT VTTTTTSSSQ PTPPHPPPPK GSSCSAKFKC  120
MPPSSIPIPR SPFLSLPHGL SPSTLLDSPM LLSNSQGPGP FEISHQQVLA QIQAQAQAQA  180
QSQSQSQSQS QAQAKAQSQA QLQDHAASGH PPESCMMPPS AGAGSVSSNA IPPQKEIESP  240
SETKQAIGIS SKESNKRTPA SVPPVSVIGK PSADGYNWRK YGQKQVKGSE FPRSYYKCTH  300
PNCPVKKKVE RSHDGQVTEI VYKGEHSHPK PHPTRRMSIV SPQYLSEGGQ EVTLSAGRDL  360
IARPNGSNSE FSGDPNVRNG RSADGSDPST STKIHETGNK SPERSSGSSD DPRGADEGCD  420
DEPDSKRGKK DTSKEVLIVA PLRTIREPRV VVQTRSDVDI LDDGYRWRKY GQKTSGLCVQ  480
PLLQKWSSSL LCTARKDAQY DPSLTACPAL YAQKRYNLFS ACKLLTE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-182743311674WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU2697620.0EU269762.1 Pinus monticola WRKY transcription factor PmWRKY114 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0C9S7W81e-171A0A0C9S7W8_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_12653_2863 transcribed RNA sequence
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.11e-52WRKY family protein