PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00010717-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

WRKY

Protein Properties

Length: 682aa MW: 74447.6 Da PI: 5.7513

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00010717-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	90.2	1.7e-28	366	425	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt gCpv+k+v+r+ d +++++tYeg Hnh+ PSME_00010717-RA 366 MNDGCHWRKYGQKIAKGNPCPRAYYRCTIVpGCPVRKQVQRCPGDMSILVTTYEGIHNHS 425 58************************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.3E-30	351	427	IPR003657	WRKY domain
SuperFamily	SSF118290	4.97E-27	359	427	IPR003657	WRKY domain
PROSITE profile	PS50811	27.887	361	427	IPR003657	WRKY domain
SMART	SM00774	1.2E-34	366	426	IPR003657	WRKY domain
Pfam	PF03106	1.4E-24	367	424	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 682 aa Download sequence Send to blast
HWFGLIMTME SDQLGLDEKH ISQQKSSLGL ESIKSNPNSE EKMAINGRLG RVIEIDLVGK 60 LEDQNGERDE DSVLDFKEYV NISAKNRNKD LVCDLQQDGC EAAETSKQIH DYYQYDKHDS 120 AGIATPVTSQ IDEQKKIETL QIEMGRIKEE NDYLKMDLSR GINNYRNLQI HLCSVMKQQE 180 EHDPQLREQD LQRLQDESQL VALSLCTNPS AKGHSKEETE GETEKLQLIE NQGRHVRSSS 240 VGGGSGENLR DLKLSLDIKD EETSRESGEG KLATRSGIPT PTRSDGGLVK MGSMDLPQVE 300 KQPCVSPENS SQVKDDENMY EQEGGSCSPN KKMKTSHDTD CNNSETIPSM RKARVSVRAI 360 CEATTMNDGC HWRKYGQKIA KGNPCPRAYY RCTIVPGCPV RKQVQRCPGD MSILVTTYEG 420 IHNHSLPAAA TAMASTTAAA VCMLTSGSTS SLEAMNGNSY FLGVGNSKLD QFLAANPHVS 480 ISTNSFPSIT IDLTNNPNSQ SKLRLGAAGS AGTPWAASFP SQFRYPSAGP SLISHNSSTM 540 ASDHFLTPPL GSTNLWNNNN NGSYYSQPQA FSKPSALFTQ YNDLASQQFQ QRPPTIDHSR 600 AIQGALSRSS TQTLIQNIVA ETVAKCNNSS GSQYFLADTV GAATAAITSD PNFTAALTNA 660 ITSIISQDTT QSQSGSSSRV LI

Sequence ? help Back to Top

Protein Sequence Length: 682 aa Download sequence Send to blast

HWFGLIMTME SDQLGLDEKH ISQQKSSLGL ESIKSNPNSE EKMAINGRLG RVIEIDLVGK  60
LEDQNGERDE DSVLDFKEYV NISAKNRNKD LVCDLQQDGC EAAETSKQIH DYYQYDKHDS  120
AGIATPVTSQ IDEQKKIETL QIEMGRIKEE NDYLKMDLSR GINNYRNLQI HLCSVMKQQE  180
EHDPQLREQD LQRLQDESQL VALSLCTNPS AKGHSKEETE GETEKLQLIE NQGRHVRSSS  240
VGGGSGENLR DLKLSLDIKD EETSRESGEG KLATRSGIPT PTRSDGGLVK MGSMDLPQVE  300
KQPCVSPENS SQVKDDENMY EQEGGSCSPN KKMKTSHDTD CNNSETIPSM RKARVSVRAI  360
CEATTMNDGC HWRKYGQKIA KGNPCPRAYY RCTIVPGCPV RKQVQRCPGD MSILVTTYEG  420
IHNHSLPAAA TAMASTTAAA VCMLTSGSTS SLEAMNGNSY FLGVGNSKLD QFLAANPHVS  480
ISTNSFPSIT IDLTNNPNSQ SKLRLGAAGS AGTPWAASFP SQFRYPSAGP SLISHNSSTM  540
ASDHFLTPPL GSTNLWNNNN NGSYYSQPQA FSKPSALFTQ YNDLASQQFQ QRPPTIDHSR  600
AIQGALSRSS TQTLIQNIVA ETVAKCNNSS GSQYFLADTV GAATAAITSD PNFTAALTNA  660
ITSIISQDTT QSQSGSSSRV LI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-21	357	428	8	78	Probable WRKY transcription factor 4
2lex_A	2e-21	357	428	8	78	Probable WRKY transcription factor 4

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68150.1	3e-43	WRKY DNA-binding protein 9