PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00010774-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 379aa    MW: 43539.7 Da    PI: 8.8511
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00010774-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.94.8e-131360148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg+WT+ Ed  l ++++ +G g+W+  +++ g++R++k+c++rw ++l
  PSME_00010774-RA 13 RGAWTKTEDMSLFEYIRIHGDGQWRNLPKKTGLKRCGKSCILRWKNFL 60
                      89********************************************97 PP
2Myb_DNA-binding45.22.1e-14115162148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+WT+ Ed +l ++++ +G g W++ +++ g++R++k+c++rw +yl
  PSME_00010774-RA 115 RGAWTKTEDMILSEYIRIYGDGEWTKLPKKAGLKRCGKSCRLRWTNYL 162
                       89********************************************97 PP
3Myb_DNA-binding48.91.5e-15168212147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg+ +++E++++v+ +++lG++ W++Ia +++ gRt++++k++w++ 
  PSME_00010774-RA 168 RGNISPDEEDIIVRMHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNTC 212
                       7899******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-18470IPR009057Homeodomain-like
PROSITE profilePS5129418.565864IPR017930Myb domain
SMARTSM007177.7E-91262IPR001005SANT/Myb domain
PfamPF002493.0E-111360IPR001005SANT/Myb domain
SuperFamilySSF466895.05E-171487IPR009057Homeodomain-like
CDDcd001671.24E-71560No hitNo description
Gene3DG3DSA:1.10.10.607.4E-23106165IPR009057Homeodomain-like
PROSITE profilePS5129416.05110162IPR017930Myb domain
SuperFamilySSF466895.47E-27112209IPR009057Homeodomain-like
SMARTSM007172.5E-12114164IPR001005SANT/Myb domain
PfamPF002494.6E-13115162IPR001005SANT/Myb domain
CDDcd001672.29E-8117162No hitNo description
PROSITE profilePS5129425.4163217IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.7E-24166216IPR009057Homeodomain-like
SMARTSM007176.9E-15167215IPR001005SANT/Myb domain
PfamPF002491.2E-13168212IPR001005SANT/Myb domain
CDDcd001671.47E-9172211No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MRSHCCSKKG LNRGAWTKTE DMSLFEYIRI HGDGQWRNLP KKTGLKRCGK SCILRWKNFL  60
CPEIKHENIS PDEEDIILRM HQLLGNYKEA KGSHQLRRIF TMGRSPCCSK QGLNRGAWTK  120
TEDMILSEYI RIYGDGEWTK LPKKAGLKRC GKSCRLRWTN YLRPDIKRGN ISPDEEDIIV  180
RMHRLLGNRW SLIAGRLPGR TDNEIKNYWN TCLRKKKLSV NKNQPKSNSL NLESSSNIPS  240
RALPSHVFKT QPVKPAAVIY SEILRSSRCT GYGPSNCRSE EPVKLCNVKE STNSSTDYDR  300
KTIGFEMADV NLLETKAGNY SCSIWNLEEE RSLPDSYCCP EDTATFFESL LELNRLPSPD  360
CNLLSSPVDC STDFEEFFE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-2611321625127MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18541146, ECO:0000269|PubMed:9839469}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002279900.12e-67PREDICTED: transcription factor TT2
RefseqXP_021597362.15e-67transcription factor TT2-like
SwissprotQ9S9K92e-56MYB3_ARATH; Transcription factor MYB3
TrEMBLB8LMJ65e-99B8LMJ6_PICSI; Uncharacterized protein
STRINGVIT_04s0008g01820.t011e-66(Vitis vinifera)
STRINGcassava4.1_012592m2e-66(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.11e-57myb domain protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou M, et al.
    Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis.
    Plant J., 2015. 84(2): p. 395-403
    [PMID:26332741]
  3. Wada T,Hayashi N,Tominaga-Wada R
    Root hair formation at the root-hypocotyl junction in CPC-LIKE MYB double and triple mutants of Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1089372
    [PMID:26339713]
  4. Wada T,Tominaga-Wada R
    CAPRICE family genes control flowering time through both promoting and repressing CONSTANS and FLOWERING LOCUS T expression.
    Plant Sci., 2015. 241: p. 260-5
    [PMID:26706076]
  5. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  6. Zhou M, et al.
    LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis.
    Plant Physiol., 2017. 174(3): p. 1348-1358
    [PMID:28483877]
  7. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]