PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00010923-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

C3H

Protein Properties

Length: 547aa MW: 61424.7 Da PI: 9.1683

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00010923-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34.6	3.2e-11	500	523	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +e+Cr+f++ G C +GdrCkF+H+ PSME_00010923-RA 500 QREPCRYFLK-GRCTFGDRCKFSHV 523 58******.***********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF68906	5.31E-8	124	169	No hit	No description
Gene3D	G3DSA:1.10.720.30	8.4E-10	124	168	IPR003034	SAP domain
SMART	SM00513	5.6E-6	134	168	IPR003034	SAP domain
PROSITE profile	PS50800	10.066	134	168	IPR003034	SAP domain
Pfam	PF02037	1.3E-10	134	168	IPR003034	SAP domain
Gene3D	G3DSA:4.10.1000.10	5.8E-8	494	522	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	17.319	498	525	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.0E-7	499	524	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	9.5E-9	500	523	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.61E-6	501	522	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 547 aa Download sequence Send to blast
MMMMMMFESG NPPTSSMHAS MREGYRSKAG PRVRTSRRPI GSTASSAMEA LDPRVDDQSD 60 SDSEDAHLNS HSDSEEEEDQ GEDPSFELPQ GQVSDDDESS DGVLEDPDVQ TSALNNKDEK 120 TYLEVEKLIE GGKLEKLKVD QCKLYLRKHG LRVTGRKSVL LERIQEHLKI KDGSGEEKYP 180 KSSFVLDCKG DACTGDIVMF EQNVYDMYNV AARSSGGPSI GTRTVAGRII KESYGAAKQQ 240 HTFTVRAKAM AKIEVLWSKG EKPLLPLRSL LIKGRNLYRL KTQRQPWPNE EDRRKSLQEK 300 HDRGSLARQM RDMRIQNKEV GRQVEIAQLP RHVNTRKQKE SVSVSSKVVH NDSDKKSSQS 360 VQRYDVTSLP MHELNIGNNI QKQLPVQNQG SLTFMNHGVH KGIGLLQNKG NGLLQNGNKN 420 QSASAACNYA GNSLTYSNNI PSDAGTSGTN YGLFSTSGNG LIGHTRPMSG FSDMRLPAQH 480 TRPQHTLSQH TGRPQHSLSQ REPCRYFLKG RCTFGDRCKF SHVVNYNYDL NCQMVRNKEN 540 YQTHRYD

Sequence ? help Back to Top

Protein Sequence Length: 547 aa Download sequence Send to blast

MMMMMMFESG NPPTSSMHAS MREGYRSKAG PRVRTSRRPI GSTASSAMEA LDPRVDDQSD  60
SDSEDAHLNS HSDSEEEEDQ GEDPSFELPQ GQVSDDDESS DGVLEDPDVQ TSALNNKDEK  120
TYLEVEKLIE GGKLEKLKVD QCKLYLRKHG LRVTGRKSVL LERIQEHLKI KDGSGEEKYP  180
KSSFVLDCKG DACTGDIVMF EQNVYDMYNV AARSSGGPSI GTRTVAGRII KESYGAAKQQ  240
HTFTVRAKAM AKIEVLWSKG EKPLLPLRSL LIKGRNLYRL KTQRQPWPNE EDRRKSLQEK  300
HDRGSLARQM RDMRIQNKEV GRQVEIAQLP RHVNTRKQKE SVSVSSKVVH NDSDKKSSQS  360
VQRYDVTSLP MHELNIGNNI QKQLPVQNQG SLTFMNHGVH KGIGLLQNKG NGLLQNGNKN  420
QSASAACNYA GNSLTYSNNI PSDAGTSGTN YGLFSTSGNG LIGHTRPMSG FSDMRLPAQH  480
TRPQHTLSQH TGRPQHSLSQ REPCRYFLKG RCTFGDRCKF SHVVNYNYDL NCQMVRNKEN  540
YQTHRYD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT112481	8e-42	BT112481.1 Picea glauca clone GQ03315_P04 mRNA sequence.