PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00011107-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 544aa    MW: 61846.6 Da    PI: 6.4728
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00011107-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2249.5e-08961301755
               AP2  17 AeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       AeIr p     + kr +lg++ t+e A +a++ a+ k++g
  PSME_00011107-RA  96 AEIRTP-----KgKRLWLGTYTTEEVASQAYDDAAHKFKG 130
                       899998.....44***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103215.72581138IPR001471AP2/ERF domain
CDDcd000182.08E-1387136No hitNo description
SMARTSM003801.1E-688142IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-1389138IPR001471AP2/ERF domain
SuperFamilySSF541716.15E-989138IPR016177DNA-binding domain
SuperFamilySSF541718.5E-6386443IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-6387444IPR001471AP2/ERF domain
SMARTSM003800.031387449IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MRMIESRLED IIHKENPYYG EMTLLVIASI VAHHDMEFFD PLKMLEPIET NLTNHSGGQS  60
LLPKMLVCPP VAIFDVLPVS VHYGQEDQWP WGARGAEIRT PKGKRLWLGT YTTEEVASQA  120
YDDAAHKFKG KCVVTNVSKE YGVDSSLEAH LRSLREHTSM FREEPKRRRS SKKKKRDDDQ  180
LLLDENATNN LWDLTALGRG PSKLLDGDSS SMFGFNPTYN YINMDNIGYG GHLSSLVSRF  240
DNDEVGDLTL ISHELEVSAS QEQHIQELCG EKESKLIEIF ARVYSKKQKL RKTVDLNSST  300
LRITVPEGIL GEEETPDSYL CERNDRNKFR CISAAIDGIL DTDNPAENST DEEKHKDKLA  360
KRAIDSENNF SSPEQNVSLG NVENVSHFFG VRKTFSGRYE ASIYDSNRKK KVYVSIYDSM  420
IEATHARDLK EIDLGVASVI NFPELQEKTN LQHETDQVDS ASLKNLLKVK YAMQQLSVKA  480
EKHANVTPQK VIKRKPRNFQ KFPTSKRSKL IDHSTRNDDQ TSGLYKAKFV NFEEPGYAII  540
ETQL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165175KRRRSSKKKKR
2167173RRSSKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43410.12e-11ERF family protein