PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00011186-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family C2H2
Protein Properties Length: 536aa    MW: 60723.4 Da    PI: 8.6009
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00011186-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.92e-06387409123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       + C  Cgk+F ++s+Lk H + H
  PSME_00011186-RA 387 HNCLECGKRFATPSSLKDHRNEH 409
                       67******************998 PP
2zf-C2H214.79.2e-05415439123
                       EEET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                       ykC+  dC ++F++k +L rH+++H
  PSME_00011186-RA 415 YKCKfeDCAMRFKSKQLLCRHLKKH 439
                       9***********************9 PP
3zf-C2H212.90.00033443467123
                       EEET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                       +kC    Cgk+F  ++ L +H++ H
  PSME_00011186-RA 443 HKCMfeGCGKRFAFRERLIVHQKIH 467
                       6888889****************99 PP
4zf-C2H217.11.6e-05474497223
                       EET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   2 kCp..dCgksFsrksnLkrHirtH 23 
                       +Cp   Cgk+F+   +L+ H rtH
  PSME_00011186-RA 474 VCPweGCGKRFKWTNSLQGHKRTH 497
                       79999******************9 PP
5zf-C2H218.17.6e-06503527123
                       EEET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                       ++C+   Cg++F  k +L+rH+rtH
  PSME_00011186-RA 503 FQCTyqGCGRHFGYKVDLTRHLRTH 527
                       89**********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.8E-7383406IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.58E-11385439No hitNo description
SMARTSM003550.012387409IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015714.731387414IPR007087Zinc finger, C2H2
PROSITE patternPS000280389409IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.5E-9407439IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.004415439IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.494415439IPR007087Zinc finger, C2H2
PROSITE patternPS000280417439IPR007087Zinc finger, C2H2
SuperFamilySSF576672.68E-9426484No hitNo description
Gene3DG3DSA:3.30.160.608.3E-9443465IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0085443467IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015714.212443472IPR007087Zinc finger, C2H2
PROSITE patternPS000280445467IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.3E-16466495IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015714.96473502IPR007087Zinc finger, C2H2
SMARTSM003554.0E-4473497IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280475497IPR007087Zinc finger, C2H2
SuperFamilySSF576674.57E-13484530No hitNo description
Gene3DG3DSA:3.30.160.608.8E-16496529IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003554.5E-4503527IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.027503532IPR007087Zinc finger, C2H2
PROSITE patternPS000280505527IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
QQQQQQQQFF HHPTTHLTLL HHHPHSHPPF LAHSVLFPSP LHHHFIHFHP LQQQQQQFCQ  60
QQEQIPNRGP GPDQIHHPVG LHPLQVRHTV HQPQPHHQPH FQLPQFDQPQ LSDEGYREPT  120
SENHQEESHQ GPEEGNAGDN SSEKNRDGSQ IPCTDDSSSG EVFEQRLLAP IAAGLGDPSF  180
GGVLASIKSA VTNQVLQNQP ISTHVPSADQ TISDPKSDGS EGGPESHEEG GGVHGNAQRE  240
HSCSACVDNL EQPKGKKKRK KLKRLHLQLD SLVHQKLMRV ACDQHNGSVE QFIIATLNAS  300
EVGVMSGKKA AIKKPTLSKW KRTRFEQMKG SETQELAMAF RLLAASTPGS GVTSEFLSIP  360
WQELTMSQIE KMLEETKKML FLNEKVHNCL ECGKRFATPS SLKDHRNEHS GDKPYKCKFE  420
DCAMRFKSKQ LLCRHLKKHE CAHKCMFEGC GKRFAFRERL IVHQKIHSNE RPLVCPWEGC  480
GKRFKWTNSL QGHKRTHTGE KPFQCTYQGC GRHFGYKVDL TRHLRTHNGQ PARASH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_A2e-2637953014188Aart
2i13_B2e-2637953014188Aart
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1255263KKKRKKLKR
2256260KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1099230.0BT109923.1 Picea glauca clone GQ03213_N01 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002983078.21e-118zinc finger protein 26
TrEMBLA0A1Y1ISJ71e-115A0A1Y1ISJ7_KLENI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.11e-25C2H2 family protein