PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00011272-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 143aa    MW: 16453.3 Da    PI: 5.4683
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00011272-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.62.8e-05110134529
                       HHHHHHHHHHHHHHHHHHHHCTSCC CS
               HLH   5 hnerErrRRdriNsafeeLrellPk 29 
                       +   Er+RR ++++ + +Lr+++Pk
  PSME_00011272-RA 110 KFYTERKRRMKLKETLLNLRSVVPK 134
                       5678********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.29E-696137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-4106135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MTLHSQCIND NHNDLDHGFH LQDMTHIGSA GLFENLSGQS SSYSELNPSI SVCSELIAMD  60
HQNWMDMDEN SRQFEWDDTD PEIIGSNPDA TQDFNSNGDV VLQQHRTSKK FYTERKRRMK  120
LKETLLNLRS VVPKISKVCL FLH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-