PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00011298-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 172aa    MW: 19329.2 Da    PI: 8.7797
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00011298-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.18.1e-40181171100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +CaaCk+lrr+C+++C+++pyf   +p+kfa+vhk+FGasnv+k+l ++pe++r da++slvyeA ar+rdPvyG++g+i  l++q++ l+ae
  PSME_00011298-RA  18 PCAACKLLRRRCSQECPFSPYFSPLEPQKFAYVHKVFGASNVSKMLMEVPESQRADAANSLVYEASARLRDPVYGSTGTIYLLERQVQVLRAE 110
                       7******************************************************************************************** PP

            DUF260  94 lallkee 100
                       l++l++e
  PSME_00011298-RA 111 LNALRAE 117
                       **99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.79317118IPR004883Lateral organ boundaries, LOB
PfamPF031952.2E-3918115IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MACRPMLGSP AALNTITPCA ACKLLRRRCS QECPFSPYFS PLEPQKFAYV HKVFGASNVS  60
KMLMEVPESQ RADAANSLVY EASARLRDPV YGSTGTIYLL ERQVQVLRAE LNALRAEIMR  120
YKYRDRVLQP PMLGVNDVNS DECKATNLTT GTVNSVDHTV KEQYYSTMNH SR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-4291212114LOB family transfactor Ramosa2.1
5ly0_B1e-4291212114LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021684825.17e-70LOB domain-containing protein 15
SwissprotQ8L5T52e-60LBD15_ARATH; LOB domain-containing protein 15
TrEMBLA0A1Q3B3W32e-68A0A1Q3B3W3_CEPFO; DUF260 domain-containing protein
STRINGVIT_13s0067g02380.t016e-69(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40470.16e-63LOB domain-containing protein 15
Publications ? help Back to Top
  1. Ohashi-Ito K,Iwamoto K,Fukuda H
    LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements.
    Plant Cell Physiol., 2018. 59(5): p. 989-996
    [PMID:29444288]