PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00011325-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 243aa    MW: 27138.8 Da    PI: 9.7062
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00011325-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.74e-112391148
                      HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding 11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      ll ++v+ +G ++W+tIa   g+ R++k+c++rw +yl
  PSME_00011325-RA  2 LLRKYVETHGVERWNTIALNAGLMRSGKSCRLRWMNYL 39
                      799*********************************97 PP
2Myb_DNA-binding48.22.4e-154987545
                      -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
   Myb_DNA-binding  5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                      +++E+el+++++k+lG++ W++Ia +++ gRt++++k++w+
  PSME_00011325-RA 49 SADEEELIIRLHKLLGNR-WSLIAGRVP-GRTDNEIKNYWN 87
                      89****************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.093141IPR001005SANT/Myb domain
PROSITE profilePS5129411.35139IPR017930Myb domain
PfamPF002491.1E-9239IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-17246IPR009057Homeodomain-like
SuperFamilySSF466891.38E-23286IPR009057Homeodomain-like
CDDcd001673.69E-8239No hitNo description
PROSITE profilePS5129423.5264094IPR017930Myb domain
SMARTSM007177.2E-144492IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-234794IPR009057Homeodomain-like
PfamPF002491.3E-134987IPR001005SANT/Myb domain
CDDcd001672.55E-124990No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MLLRKYVETH GVERWNTIAL NAGLMRSGKS CRLRWMNYLR PNVKLGDISA DEEELIIRLH  60
KLLGNRWSLI AGRVPGRTDN EIKNYWNIHL SKKLETRHKI PISRRKRSRP LDCTDHENPM  120
SMQNSTNGNL DSRSADAAAT NTDQQLISSS RDSIPTPVNS REQAYSGPDL GDFCLCKATQ  180
VMSGLTEPSP LLTDEFINAK ISSPVVDRLK CRISGSRALT FEGEAQRTNI SGPSSAQSGV  240
YGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-2079622110B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.12e-45myb domain protein 5