PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00011466-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 283aa    MW: 31199.2 Da    PI: 7.9525
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00011466-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.13.7e-14221264755
                       HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       ++Er+RR+++N+ +  Lr l+P+      +K++K++i+  A++YI+sLq
  PSME_00011466-RA 221 AAERKRRRKLNDLLMSLRALVPNI-----TKMDKSSIVSDAINYIQSLQ 264
                       79*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.631214263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-16216278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-15220269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.4E-14221278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.28E-14221268No hitNo description
PfamPF000108.4E-12221264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MGHSLSLAPL ETSKVRVSLS LTPLETSKGK SVGGSSLETT SYLEMGVAGI SSNNIDPLHT  60
LLGMESFGLD YFEDSVFTPS SESLGFSGLE SSGSTTINMD SILESEDRWS LKSLQCISQL  120
PYRWTNIREG NLQPLSSKEN YGPTADHTYM PNKNVQNVEP ASAPCNIVVK DIGRCSKRNC  180
SSMLITFGQN EEHYVDKVTN IVDKRGQASP SNVSWASRNL AAERKRRRKL NDLLMSLRAL  240
VPNITKMDKS SIVSDAINYI QSLQKQIKER EVSILALRSN TTQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1222229ERKRRRKL
2223227RKRRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.22e-17bHLH family protein