PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00011491-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family DBB
Protein Properties Length: 293aa    MW: 32142.2 Da    PI: 6.4959
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00011491-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.11.5e-07549442
          zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                        C+ +e+ e++l C  ++  lC +C  + H        H++vpl
  PSME_00011491-RA  5 VQCDVCEKAEATLLCCADEAALCSSCDNKVHAAnklaskHQRVPL 49
                      57*****************************66899999999986 PP
2zf-B_box30.47.9e-105588235
          zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHk 35
                      + +kC+ ++ek   +fC +++ llC++C ++ H 
  PSME_00011491-RA 55 QSPKCDICQEKTGYFFCLEDRALLCRQCDVSVHT 88
                      789****************************993 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.879249IPR000315B-box-type zinc finger
SMARTSM003361.7E-12249IPR000315B-box-type zinc finger
PfamPF006438.0E-6549IPR000315B-box-type zinc finger
CDDcd000212.64E-7549No hitNo description
PROSITE profilePS501199.51354101IPR000315B-box-type zinc finger
SMARTSM003366.6E-1554101IPR000315B-box-type zinc finger
PfamPF006436.0E-85596IPR000315B-box-type zinc finger
CDDcd000211.76E-957101No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MKMKVQCDVC EKAEATLLCC ADEAALCSSC DNKVHAANKL ASKHQRVPLI NPSSQSPKCD  60
ICQEKTGYFF CLEDRALLCR QCDVSVHTIN NLVAAHQRFL VTGVKVGLEP SNPISYPINT  120
FAQSSDTTNQ KPQTLRNGPR EVSATSYQAV HKGAGGGGTA RRGTVSEYYS ELLPLWRMDE  180
FLNLPELDNG YSFAEAGSSR ADNANFVEEW TANSSGVEEV NAENCLAQVP EMPSPPTASG  240
LYWPRRNIHH PKEGKQREDL AIFGFDDALL VPDIGCRSSP PDSPLSKKRR LHA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1111880.0BT111188.1 Picea glauca clone GQ03234_A20 mRNA sequence.
GenBankEF6768290.0EF676829.1 Picea sitchensis clone WS02753_P02 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009625544.13e-82PREDICTED: B-box zinc finger protein 22
TrEMBLB8LM300.0B8LM30_PICSI; Uncharacterized protein
STRINGXP_009625544.11e-81(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.14e-70light-regulated zinc finger protein 1