PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00011818-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HD-ZIP
Protein Properties Length: 231aa    MW: 25737.1 Da    PI: 9.558
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00011818-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.11.3e-1799150556
                       SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        ++++eq   Lee F kn++p+++ ++ +A +l++  rqV vWFqNrRa+ k
  PSME_00011818-RA  99 LRLSREQCALLEESFLKNKTPQHNVKQAMALQLNIRPRQVEVWFQNRRARTK 150
                       57899*********************************************98 PP
2HD-ZIP_I/II100.31.8e-3297184289
       HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                       kk+rls+eq +lLEesF ++++ +++ K+++a +L+++prqv+vWFqnrRARtk+kq E+dye Lkr+ ++l+een++L+ke e+Lr+
  PSME_00011818-RA  97 KKLRLSREQCALLEESFLKNKTPQHNVKQAMALQLNIRPRQVEVWFQNRRARTKLKQSEVDYELLKRCNESLAEENRKLHKELENLRA 184
                       9*************************************************************************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-1591150IPR009057Homeodomain-like
PROSITE profilePS5007115.45192152IPR001356Homeobox domain
SMARTSM003891.6E-1294156IPR001356Homeobox domain
SuperFamilySSF466894.28E-1697160IPR009057Homeodomain-like
CDDcd000865.19E-1397153No hitNo description
PfamPF000466.4E-1599150IPR001356Homeobox domain
PROSITE patternPS000270127150IPR017970Homeobox, conserved site
SMARTSM003402.0E-17152195IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
GSRTCNERSA GKANVIIHGV PVSRLSDANK FNASCYSNEE AGTINVSPSN STVESNATNP  60
VNGYAMFKGK RGATEELDNE RGLSRPLSDL EEEGCAKKLR LSREQCALLE ESFLKNKTPQ  120
HNVKQAMALQ LNIRPRQVEV WFQNRRARTK LKQSEVDYEL LKRCNESLAE ENRKLHKELE  180
NLRAMKLSPP LNPPGTLTIC PSCERVSAAN KSSNFNLAKA QSMFKRGDFG P
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144152RRARTKLKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006848871.12e-51homeobox-leucine zipper protein HAT22
RefseqXP_010919661.14e-51homeobox-leucine zipper protein HAT4
TrEMBLA9NKN43e-62A9NKN4_PICSI; Uncharacterized protein
STRINGERN104527e-51(Amborella trichopoda)
STRINGLus100078492e-50(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47370.13e-47Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein