PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00011821-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

HD-ZIP

Protein Properties

Length: 349aa MW: 38554.3 Da PI: 8.4821

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00011821-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58	1.6e-18	216	268	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + ++++eq Lee F+kn +p +e++ LA +l++ rqV vWFqNrRa+ k PSME_00011821-RA 216 KLRLSREQCALLEESFQKNTTPESNEKQALALQLNIRPRQVEVWFQNRRARTK 268 56789**********************************************98 PP
2	HD-ZIP_I/II	104.3	9.6e-34	215	302	2	89
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 kk+rls+eq +lLEesF+++++ e+++K++la +L+++prqv+vWFqnrRARtk+kq+E dy+ Lkr+ ++l+een++L+ke ++Lr+ PSME_00011821-RA 215 KKLRLSREQCALLEESFQKNTTPESNEKQALALQLNIRPRQVEVWFQNRRARTKLKQTELDYQLLKRCNESLAEENRKLHKELQKLRA 302 9*************************************************************************************94 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.0E-17	204	268	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.78E-17	208	271	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.633	210	270	IPR001356	Homeobox domain
SMART	SM00389	4.3E-15	212	274	IPR001356	Homeobox domain
CDD	cd00086	9.06E-15	215	271	No hit	No description
Pfam	PF00046	6.9E-16	216	268	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	245	268	IPR017970	Homeobox, conserved site
SMART	SM00340	3.5E-16	270	313	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	7.7E-7	270	304	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MDQDCSTPLS LELSLGTGTT IREKDREYAS HINVNGPPLE TLTKESGMDQ TCSTRLSLGL 60 SLGTGTTTRQ KDHDYASYRN VNGPPVQLDL FPLAPVLPPE SRCGTLPCQK TSIGQSINGS 120 GSCSERSAGK GNVTIHGVPV SRLSDANKFH ASCYSNEDVG PINVSSSNST IESNENNQVN 180 GYAMFKRKRG GTQGLENERG WSRPVSDLEE EGCSKKLRLS REQCALLEES FQKNTTPESN 240 EKQALALQLN IRPRQVEVWF QNRRARTKLK QTELDYQLLK RCNESLAEEN RKLHKELQKL 300 RAMKLEPPLR PPGTLTMCPS CERVSPANNS SHFTLGKVES MFKRGASGP

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MDQDCSTPLS LELSLGTGTT IREKDREYAS HINVNGPPLE TLTKESGMDQ TCSTRLSLGL  60
SLGTGTTTRQ KDHDYASYRN VNGPPVQLDL FPLAPVLPPE SRCGTLPCQK TSIGQSINGS  120
GSCSERSAGK GNVTIHGVPV SRLSDANKFH ASCYSNEDVG PINVSSSNST IESNENNQVN  180
GYAMFKRKRG GTQGLENERG WSRPVSDLEE EGCSKKLRLS REQCALLEES FQKNTTPESN  240
EKQALALQLN IRPRQVEVWF QNRRARTKLK QTELDYQLLK RCNESLAEEN RKLHKELQKL  300
RAMKLEPPLR PPGTLTMCPS CERVSPANNS SHFTLGKVES MFKRGASGP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	262	270	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that plays a role in auxin-mediated morphogenesis. Negatively regulates lateral root elongation. {ECO:0000269\|PubMed:12492842}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By indole-3-acetic acid (IAA). {ECO:0000269\|PubMed:12492842}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	P46601	4e-45	HAT2_ARATH; Homeobox-leucine zipper protein HAT2
TrEMBL	A9NKN4	6e-84	A9NKN4_PICSI; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47370.1	1e-44	Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zou LJ, et al. Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus. Plant Cell Physiol., 2016. 57(9): p. 1879-89 [PMID:27328697]