PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00011890-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

NAC

Protein Properties

Length: 289aa MW: 33269 Da PI: 8.113

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00011890-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	145.2	3.5e-45	4	130	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 pGfrF Pt+eelv +yLkk+++g++ l+++ +i+++d+y+++Pw+Lp +++ +e++w+fF++rd+k++ + r+nr tksgyWkatg+d+++ PSME_00011890-RA 4 PGFRFYPTEEELVGFYLKKRIQGSHaLNFDIIIPTLDLYRYDPWELPgLAHDVGERQWFFFVPRDHKNS-SARPNRLTKSGYWKATGSDRAIR 95 9*********************96666556***********657777999******986.79******************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ + +glkk+Lvfykg+ap g++tdW+m+eyr+ PSME_00011890-RA 96 NEMLQCIGLKKILVFYKGKAPYGQRTDWIMNEYRM 130 99999**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	51.231	2	151	IPR003441	NAC domain
Pfam	PF02365	2.9E-24	4	130	IPR003441	NAC domain
SuperFamily	SSF101941	4.05E-47	4	151	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MDLPGFRFYP TEEELVGFYL KKRIQGSHAL NFDIIIPTLD LYRYDPWELP GLAHDVGERQ 60 WFFFVPRDHK NSSARPNRLT KSGYWKATGS DRAIRNEMLQ CIGLKKILVF YKGKAPYGQR 120 TDWIMNEYRM PDLRSSTLKM KDIVLCRIYR KAASQKSMEQ QAKPVHVLKE EPVVSSDEYE 180 ETSHSTSLNG GGLLSNPMTE IEVSSLYYKK RERECSSDQS KSINGVNFFE CLEPIIMSEE 240 TRVPKNHKAC KEAQLELPKV SVDCLFSQSI TSPSALLSTP TQSSLHYFE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-46	4	156	19	170	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-46	4	156	19	170	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-46	4	156	19	170	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-46	4	156	19	170	NO APICAL MERISTEM PROTEIN
4dul_A	2e-46	4	156	19	170	NAC domain-containing protein 19
4dul_B	2e-46	4	156	19	170	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008791987.1	9e-66	NAC domain-containing protein 22-like
Swissprot	Q10S65	9e-60	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	A0A075M5N5	1e-131	A0A075M5N5_9SPER; NAC domain protein
STRING	XP_008791987.1	3e-65	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.1	2e-59	NAC domain containing protein 35

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]