PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00012145-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

bHLH

Protein Properties

Length: 488aa MW: 53581.2 Da PI: 8.1607

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00012145-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	32.8	1.5e-10	54	78	38	62
zf-Dof 38 ryWtkGGalrnvPvGggrrknkkss 62 r+WtkGG+lr vP+Ggg+rknk+++ PSME_00012145-RA 54 RHWTKGGTLRTVPIGGGCRKNKRAK 78 99********************976 PP
2	HLH	36.7	7.3e-12	384	430	7	55
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 ++Er+RR+++N+ + Lr l+P+ ++ ++K++i+ A++YI+ Lq PSME_00012145-RA 384 AAERKRRRKVNELLMSLRALVPNI---TKMIlMDKSSIVSDAIDYIQILQ 430 79*******************7...78888*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.1E-6	54	76	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	3.0E-6	54	76	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50888	13.516	377	429	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.14E-14	379	443	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.4E-11	383	435	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.71E-12	384	434	No hit	No description
Pfam	PF00010	1.3E-9	384	430	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.7E-11	384	447	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 488 aa Download sequence Send to blast
MKTMMLNPVE ICMIPPIGHS FVHDFVCMGL PGTIFAAAWG FLALSLLPLN GHGRHWTKGG 60 TLRTVPIGGG CRKNKRAKRT VAAEQPIFNT QNEPTTSARS SANALPISLD HHQNDLNPAT 120 NSSSYFNLSA HSTTGSTEAS LAFSRVQEAT RNGGRHVNHM QHALAIIALR RVHYSSLTNA 180 FSDEILEAAF NGKSVGGSSL ETTSYLEMGV AGISSNSINP LHTLLGMESF GLDDFEDSVF 240 TPSSESLGFS GLESSRSTTI NMDSILESED RWSLKPLQCI SQSPYRWTNL REGNLQPLSS 300 NENYGPTADH TYMPNENVQN TEPASAPCNI VVKDIGRRSK INCSSMLITF GQNEEHYTDK 360 VTNIVDKRGQ TSPSNVSWAS RNLAAERKRR RKVNELLMSL RALVPNITKM ILMDKSSIVS 420 DAIDYIQILQ KQIKEREVSI PALRSNTTQQ SRSNTSELIS SNTTGSVDEG DYEKKPTKSQ 480 AQQGFKII

Sequence ? help Back to Top

Protein Sequence Length: 488 aa Download sequence Send to blast

MKTMMLNPVE ICMIPPIGHS FVHDFVCMGL PGTIFAAAWG FLALSLLPLN GHGRHWTKGG  60
TLRTVPIGGG CRKNKRAKRT VAAEQPIFNT QNEPTTSARS SANALPISLD HHQNDLNPAT  120
NSSSYFNLSA HSTTGSTEAS LAFSRVQEAT RNGGRHVNHM QHALAIIALR RVHYSSLTNA  180
FSDEILEAAF NGKSVGGSSL ETTSYLEMGV AGISSNSINP LHTLLGMESF GLDDFEDSVF  240
TPSSESLGFS GLESSRSTTI NMDSILESED RWSLKPLQCI SQSPYRWTNL REGNLQPLSS  300
NENYGPTADH TYMPNENVQN TEPASAPCNI VVKDIGRRSK INCSSMLITF GQNEEHYTDK  360
VTNIVDKRGQ TSPSNVSWAS RNLAAERKRR RKVNELLMSL RALVPNITKM ILMDKSSIVS  420
DAIDYIQILQ KQIKEREVSI PALRSNTTQQ SRSNTSELIS SNTTGSVDEG DYEKKPTKSQ  480
AQQGFKII

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	386	390	RKRRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57150.3	1e-13	bHLH family protein