PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00012259-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WRKY
Protein Properties Length: 368aa    MW: 41521.1 Da    PI: 8.7957
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00012259-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.56.6e-29220277258
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                        Dg++WrKYGqK+ ++++fprsYY+C+ a +Cpvkk+v+r+a+dp+++++tYegeH+h
  PSME_00012259-RA 220 ADGCQWRKYGQKTTRNNPFPRSYYKCAWApSCPVKKQVQRCAQDPTILITTYEGEHTH 277
                       69*************************999**************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-31208277IPR003657WRKY domain
SuperFamilySSF1182909.55E-26213278IPR003657WRKY domain
PROSITE profilePS5081125.614214280IPR003657WRKY domain
SMARTSM007743.7E-33219279IPR003657WRKY domain
PfamPF031069.2E-26221277IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MAGHSCLECF SGARVRWLCI CQRYQSINLS HKVQRDKLED EMEGQKNKVT MLVAEINRVN  60
EENQKLKSMV KSMTGKYSYL QMHIRSLVQQ KKRVDVIQIF NLDHQSKDVM CPAPVNLDSG  120
SAVSHQSDPT SGCNYERDEE KEKKNVKFMD DQQLPSKKRK INYMQSEQIE KYGINSSMDD  180
NPCFHDKKPQ VLSSGSGEQT AAAPKRIVAV RTSSEESARA DGCQWRKYGQ KTTRNNPFPR  240
SYYKCAWAPS CPVKKQVQRC AQDPTILITT YEGEHTHYLS PLAMAAMHAS SSSQLISEGL  300
NTVNLNFNAD NRQFIPCTAT ISTSSSFPTI TLDLTDNRLC NPGLQLQPPH IAAGSFRKFS  360
PLFKDMGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-20209279776Probable WRKY transcription factor 4
2lex_A2e-20209279776Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A482CVK91e-139A0A482CVK9_9SPER; WRKY164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.11e-34WRKY family protein