PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00012382-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

SBP

Protein Properties

Length: 176aa MW: 19608.5 Da PI: 5.3461

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00012382-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	35.7	2.3e-11	41	67	52	78
TTT--SS--S-STTTT-------S--- CS SBP 52 lsefDeekrsCrrrLakhnerrrkkqa 78 ++efDe kr Cr+rLa+hn+rrrk+q+ PSME_00012382-RA 41 FEEFDEVKRNCRKRLADHNRRRRKPQT 67 68**********************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	10.366	1	65	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	8.44E-9	41	70	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.2E-5	42	64	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MVSNFDAKAS EAENDQVKIP YEGINKNTSR ILSMEELGMV FEEFDEVKRN CRKRLADHNR 60 RRRKPQTNTI VPAVSSAEAA TALKVEDDDN NVSGSCNNTS RGSMSSRELG SSQWMVGSSD 120 SASSLEAVQQ MFSLLEPAEH HNRTEEQAQT ARPVEYLSHR HQGDLNSKEP VDGNPK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	47	64	KRNCRKRLADHNRRRRKP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	6e-10	SBP family protein