PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00012479-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 290aa    MW: 33010.1 Da    PI: 6.9627
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00012479-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.57.4e-11107153755
                       HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                       + Er RR+++++ f++Lr+llP+       +K + ++ + +Av+Y+++Lq
  PSME_00012479-RA 107 ITERERRKEMKTLFSRLRSLLPEeH---LRGKRTVSDQVLEAVNYVRHLQ 153
                       78*********************66...9********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.287100152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-10102167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.19E-9102157No hitNo description
SuperFamilySSF474594.84E-12103165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-5106158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.1E-8107153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
VSKKSIPSWL HSQFLSCNDL MSNFDVESVS SNSNPVLSTQ DPFLSSYNTD HHADIFNFVD  60
GCSSGTPNGL WNRPVLPAFC NSSSPTDAQH WNRLPVVAPV DKKNPIITER ERRKEMKTLF  120
SRLRSLLPEE HLRGKRTVSD QVLEAVNYVR HLQQKVQDLS AEKEKIKDFD QNAKVSMEKY  180
VDKTPPFGGS DREYPALKIN SVSSGVQIWM NSLEHNIVYS EILLALEEGG LEVVSAASST  240
INSRVYHTIH TKVFEHNIFN VETLYHKLWH LIRTKYQSLN EDLQNAEARA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ0540054e-48FJ054005.1 Pinus taeda isolate 7532 anonymous locus 0_14072_02 genomic sequence.
GenBankFJ0540064e-48FJ054006.1 Pinus taeda isolate 7536 anonymous locus 0_14072_02 genomic sequence.
GenBankFJ0540074e-48FJ054007.1 Pinus taeda isolate 7524 anonymous locus 0_14072_02 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LNH59e-91B8LNH5_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51780.12e-16bHLH family protein