PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00012481-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 246aa    MW: 27375 Da    PI: 9.2739
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00012481-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.92.3e-1070117655
                       HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                        ++Er+RR+++++ f++ r+l+P+       +K   +e + +Av+Y+++Lq
  PSME_00012481-RA  70 TIIERKRRKEMKTLFSTVRSLVPEeY---LRGKRPVSEQVLEAVNYVRHLQ 117
                       78**********************77...99999999*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.96964116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.49E-867121No hitNo description
SuperFamilySSF474593.14E-1269135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-570122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-770117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-1070135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MISTFGVDID HGGVGGDDSG GGSDSGRPRP RPQPLVRSVL PAFCNSSSPT DGQSWNRLPV  60
VAPVDMKNST IIERKRRKEM KTLFSTVRSL VPEEYLRGKR PVSEQVLEAV NYVRHLQQKV  120
QDLSSKRDKM KADSDQNAKV SMEKSVDKIP DRDREYPSLK INSDREYSSL KINSVSSGVQ  180
IWTNSLEYEI VYSEILLALE GGGLEVVTAA SSTISNRVYH TIHTKVICYA LPLSGNTLRS  240
YLCQNR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17378RKRRKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LNH51e-63B8LNH5_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25400.16e-17bHLH family protein