PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00012621-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

bHLH

Protein Properties

Length: 355aa MW: 39237.3 Da PI: 8.0716

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00012621-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.9	5.7e-11	180	228	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+ +Er+RRd+++ ++L +llP+ + +++K + ++ L +A+++I++Lq PSME_00012621-RA 180 HKLVERQRRDKMKALCSTLISLLPEEF--NKTKHTISDKLLEATKHIRHLQ 228 99*********************65..*******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.074	175	227	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.57E-10	179	247	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.2E-11	179	242	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.59E-11	180	231	No hit	No description
Pfam	PF00010	9.0E-8	180	228	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.9E-5	181	233	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
GEELRMEDLL WRSYPDKYRY MACSSSYSQS AACFSHFHGN IDTDEGIQIQ TPTKSSKFME 60 PGTCVYDDTL ATVVFDALST KRPHDFGMLG TASLGPVVQL DRTSADDSSP AVTQRLQEFV 120 GNFGNPAQTL TCKSSANSLL NSSSSLSPPT RSNRRKKAVA GGRGHDLEAS AECIGNSDVH 180 KLVERQRRDK MKALCSTLIS LLPEEFNKTK HTISDKLLEA TKHIRHLQAK LIELGKKRDE 240 LNGTVKPFFG SSSVYKNLEA ADVRPSNARD KFQTIRVSKF GPGVQVTVNT FKNQTELSSL 300 LMVLEEAEVD VVSATVSAIN DRVFYCIHSK ISDFRNFDSA VLQGRIDQLM NGNLP

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

GEELRMEDLL WRSYPDKYRY MACSSSYSQS AACFSHFHGN IDTDEGIQIQ TPTKSSKFME  60
PGTCVYDDTL ATVVFDALST KRPHDFGMLG TASLGPVVQL DRTSADDSSP AVTQRLQEFV  120
GNFGNPAQTL TCKSSANSLL NSSSSLSPPT RSNRRKKAVA GGRGHDLEAS AECIGNSDVH  180
KLVERQRRDK MKALCSTLIS LLPEEFNKTK HTISDKLLEA TKHIRHLQAK LIELGKKRDE  240
LNGTVKPFFG SSSVYKNLEA ADVRPSNARD KFQTIRVSKF GPGVQVTVNT FKNQTELSSL  300
LMVLEEAEVD VVSATVSAIN DRVFYCIHSK ISDFRNFDSA VLQGRIDQLM NGNLP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51780.1	2e-16	bHLH family protein