PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00012683-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 249aa    MW: 27267.2 Da    PI: 6.7891
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00012683-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.7e-19145196256
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       +y+GVr+++ +g+++AeIrdp++ g  +r +lg+f t+e+Aa a+++a+ +++g+
  PSME_00012683-RA 145 HYRGVRRRP-WGKFAAEIRDPCKKG--ARLWLGTFNTPEDAALAYDRAAFRIRGA 196
                       7********.**********96643..*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.5E-31144203IPR001471AP2/ERF domain
CDDcd000182.50E-28145203No hitNo description
SMARTSM003805.8E-36145209IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-22145204IPR016177DNA-binding domain
PROSITE profilePS5103224.026145203IPR001471AP2/ERF domain
PfamPF008472.7E-13145195IPR001471AP2/ERF domain
PRINTSPR003675.2E-10146157IPR001471AP2/ERF domain
PRINTSPR003675.2E-10169185IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MNPGEGDCDW PQTTKEVAAG ERMMNIKTLN VLEFIRYHLL EVEDDLDLDL DLEHTNSSVN  60
TYHHDIQANA TATRVSCNDN GTRLTSLHSE NEFTKENSSF AAASSCSCSV SAVIKKAEAV  120
NVKVKPQAHK EENGEMNQSW ASHRHYRGVR RRPWGKFAAE IRDPCKKGAR LWLGTFNTPE  180
DAALAYDRAA FRIRGAKALV NFPLAFTSNA ENYGAAVGSV EHKRKRSGGG GRLGGTAAVE  240
TDAEAIGSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-32141208168ATERF1
3gcc_A7e-32141208168ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NMA31e-59A9NMA3_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.18e-33ethylene responsive element binding factor 1