PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00012707-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family C3H
Protein Properties Length: 417aa    MW: 43206.8 Da    PI: 7.0665
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00012707-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.67.1e-06149171527
                       --SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                       +Cr++     C+yG +C+F Hgp
  PSME_00012707-RA 149 ECRRYKTQDGCPYGVNCRFRHGP 171
                       6******99************96 PP
2zf-CCCH246.8e-08187210225
                       -S---SGGGGTS--TTTTT-SS-S CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                       kt++C+ f+ t  C+yG++C+F H
  PSME_00012707-RA 187 KTKPCMKFFSTSGCPYGESCHFLH 210
                       9*********************** PP
3zf-CCCH29.81e-09252278127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       ykt+lC++f     C++Gd+C+FaHg+
  PSME_00012707-RA 252 YKTRLCNRFNTPEGCRFGDKCHFAHGE 278
                       9************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.098146171IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-5149174IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.967149172IPR000571Zinc finger, CCCH-type
PfamPF146080.36150170No hitNo description
Gene3DG3DSA:4.10.1000.102.4E-6150175IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.995185213IPR000571Zinc finger, CCCH-type
SMARTSM003560.11185212IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.73E-6186211IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-9186210IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-6187210IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.056251279IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.09E-8251282IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-4251278IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.2E-15252283IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-7252278IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MDSFEPMLKK SRGYDTDGAN GMPWTSSGGN MNANTNPGVN LSSGVNYHSG PNPNPGHGFN  60
LNAAGANPNP NPSANPNPAV NEVIPGPPQG GYPPAMGGGS YGGGSGGSYG GGSYGGGSYE  120
NGNHSTHFEG SGFQQQQQQG SNVNGNDLEC RRYKTQDGCP YGVNCRFRHG PTDERETGNH  180
NPSSGGKTKP CMKFFSTSGC PYGESCHFLH YVAGGITALG LAPVQTMPAT TMAPPRKHSG  240
PTVDPNAMVG SYKTRLCNRF NTPEGCRFGD KCHFAHGESD LRSSNNIRVS NRNGVPMQPA  300
SAMYDNGPPA TVSNPAVFVD TNAYGNQAPT NAYGNPATTN AYGNSASTTA YGNSAVYSGN  360
TFPSSQSYAE PTPPGVAANT TFVANYSMPV ENSSQLAGVE GTMQAGPATG TNNVQVY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104117SGGSYGGGSYGGGS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1012320.0BT101232.1 Picea glauca clone GQ0074_K11 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010247477.18e-64PREDICTED: zinc finger CCCH domain-containing protein 14-like
TrEMBLA0A0C9RL801e-112A0A0C9RL80_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_12684_1767 transcribed RNA sequence
STRINGXP_010247477.13e-63(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.18e-13C3H family protein